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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010094524.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 482aa MW: 53977 Da PI: 6.5051 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.4 | 2.8e-53 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+ kv + ++ i+evd++++ePw+Lp ++k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ XP_010094524.1 21 LPPGFRFHPTDEELITFYLASKVYNGSFCG-VDIAEVDLNRCEPWELPDAAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSA 114 79*************************877.34***************8888999**************************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+l g+kktLvfykgrap+gekt+Wvmheyrl XP_010094524.1 115 sSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148 78889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-63 | 16 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.999 | 21 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-27 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MLAIEEVLRE LSGEDVNEQG LPPGFRFHPT DEELITFYLA SKVYNGSFCG VDIAEVDLNR 60 CEPWELPDAA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASSGALL 120 GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSSRHTCKE EWVICRIYHK TGDKKNPLFQ 180 GRQSSSSSYL LEALPALMET TPPTSITNCT ATNNNTNTNS SSTNNNNSTN ISANISSVLM 240 LECQTQNPMQ GLLQNHPLFL NHVNVHQQEN HDQLIKSLNI AMNNNPVPVH HHLSQLNFPI 300 NHHELIQPNS FSVSPTTTTI TTSSASNKYA NNNNINPSAA AAAAASPSAF QSMLFKSLLS 360 NQDCTSKQQH ETTVPKQCKT EADFSHFQPI SPLPLSNPFH YHQHQDHYKN PYPQPQPQPL 420 LFDDQNMHDD DNDNHDYGVL GFSSALHDMS TSLAFNRAGF QSMLDPSLTK LPAGGESWPL 480 DA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010094524.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024020105.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q9S851 | 1e-107 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | W9QWF7 | 0.0 | W9QWF7_9ROSA; Protein CUP-SHAPED COTYLEDON 3 | ||||
STRING | XP_010094524.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7888 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 1e-106 | NAC family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21407541 |
Publications ? help Back to Top | |||
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