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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010094319.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | CAMTA | ||||||||
Protein Properties | Length: 1036aa MW: 117321 Da PI: 8.4744 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 164.7 | 1.6e-51 | 27 | 142 | 4 | 118 |
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e + rwl+++ei+aiL n + ++++ ++ + pksgs++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++nptf rr XP_010094319.1 27 EaTGRWLRPNEIHAILSNNKYFTIHVKPVNLPKSGSIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFVRR 121 4478******************************************************************************************* PP CG-1 98 cywlLeeelekivlvhylevk 118 cywlL+++le+ivlvhy+e++ XP_010094319.1 122 CYWLLDKSLEHIVLVHYRETQ 142 ******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.458 | 21 | 147 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.1E-76 | 24 | 142 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.8E-46 | 28 | 140 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 3.08E-13 | 488 | 573 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 1.24E-16 | 679 | 789 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.10E-13 | 679 | 783 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.6E-15 | 682 | 787 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.698 | 691 | 787 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 10.9 | 724 | 756 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2.9E-5 | 724 | 753 | IPR002110 | Ankyrin repeat |
Pfam | PF00023 | 1.5E-5 | 725 | 755 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2200 | 763 | 794 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.15E-5 | 883 | 958 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 27 | 887 | 909 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.614 | 891 | 917 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.34 | 910 | 932 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.45 | 911 | 935 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 9.0E-4 | 913 | 931 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 42 | 990 | 1012 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.15E-5 | 990 | 1016 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.529 | 992 | 1020 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1036 aa Download sequence Send to blast |
MERQLVGSEI HGFHTLQDLD FATIMEEATG RWLRPNEIHA ILSNNKYFTI HVKPVNLPKS 60 GSIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGQDNPTFVR 120 RCYWLLDKSL EHIVLVHYRE TQESQGSPFT PGNSNSSSTS DPSAPWIASD ELDSRANNAF 180 HVGGTDLLES RDNLTVRNHE QRLYDINTLE WDELLVANAP VNSAASKGGD KVPLFNQQNQ 240 GAGNGFFAGV NGVEIGASRK FRYLGSIVQY EGDIEEDVQH GIKAGMVKWK NATGVLCDGK 300 MPIKLKEKFY RIVIRPTMLY GSECWVIKRQ YICKMSVTEM RMLRWMSGHT RMDRIRNEVI 360 RSKVGIAPIE DKGTINSVTE LSSFNNLMNP TAGNAHGNLL NDVYIPKMEG QSNSDSIGVG 420 TGDSLDVLVD NGLHSQDSFG RWIENFMTED PRSIEDPMLG TSISSVKESF VSPEMSHLQS 480 PVPEQIFNII DMSPEWGYSN EKTKILVTGF FHEQYQHLAK SNLLCVYGDA SVSAEIVQVG 540 VYRCLVSPHS PGSVNLFMSI DGQKPISQVL NFECRSPILS APVVSSEEKY NWEEFRTQMR 600 LARLLFSTSK SLNILSSKVS PNALKEAKKF ADKTSHVSNT WEVFMKSIEN SKIPFPQAKD 660 NLFRLILRDR LKDWLLERIT EGSKSTDFDI HGQGVIHLCA ILGYTWAIHL FSLSGLSLDF 720 RDKLGWTALH WAAYCGNEKM VGALLTAGAK PNLVTDPTSA NPAGYTAGDI AYMRGYEGLA 780 AYLSEKGLVE QFNDMSIAGN ASGTIETSTN DIANNENLSE EQLYLKDTLA AYRTAADAAA 840 RIQLAFREHS LKLRTKAVEF SSPEEEARSI IAAMKIQHAF RNFDTRKKIV AAARIQYRFR 900 TWKIRKDFLH TRRQVIKIQA AFRGYQVRRQ YCKILWSVGV LEKAILRWRF KRRGFRGLQV 960 NPTEAVSDQG RESDTEEDFY KTSQKQAEDR VERSVVRVQA LFRSKKAQDE YQAMKLAHNR 1020 AKLEYDILDP DIDINS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010094319.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024019984.1 | 0.0 | calmodulin-binding transcription activator 5 | ||||
Refseq | XP_024019986.1 | 0.0 | calmodulin-binding transcription activator 5 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | W9QVX0 | 0.0 | W9QVX0_9ROSA; Calmodulin-binding transcription activator 5 | ||||
STRING | XP_010094319.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4288 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Entrez Gene | 21391127 |
Publications ? help Back to Top | |||
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