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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010094226.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ERF | ||||||||
Protein Properties | Length: 383aa MW: 41968.6 Da PI: 8.1113 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.8 | 3.5e-15 | 98 | 149 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_010094226.1 98 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 149 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.5E-4 | 29 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-7 | 34 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-8 | 34 | 65 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 9.651 | 34 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-18 | 98 | 159 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.4E-10 | 98 | 149 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.16E-25 | 98 | 159 | No hit | No description |
PROSITE profile | PS51032 | 19.045 | 99 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 99 | 163 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-18 | 99 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MDSSSSQNWL AFSLSNHPHL PLSLFEAFSS PSPGGYDKEE KAARAYDLAA LKYWGPTTTT 60 NFPVSNYEKE LEEMKNMTRQ EFVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA 120 GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSIASSN LPIGGMSNTN 180 KSKNSSSDQS LSADSKTATV DDRDGLSSAS STLSFALPAA AAIKQDPSET YWSNIFAFQN 240 PSTSTVAKNP STPTATFFHT NPNSSLPLNM EFSAITTTTT SDHHNNGGFF AYSHHQQQQQ 300 QQHQNGTSAG SNTTNTAPFG MPISVHSNNN NSTTTYDQTS SSSGYNNSGN NWNNIGHAFH 360 HRQYQAHHAK PNTLFQTPIF GVE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010094226.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229628 | 1e-161 | KP229628.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF05) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024019917.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-102 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | W9QVY5 | 0.0 | W9QVY5_9ROSA; AP2-like ethylene-responsive transcription factor AIL5 | ||||
STRING | XP_010094226.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12562 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 5e-91 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 21399805 |
Publications ? help Back to Top | |||
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