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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010094187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 360aa MW: 40130.7 Da PI: 4.5504 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.8 | 3e-21 | 29 | 140 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 ppG+rF P+deel+++yL +k +++ +e + +i+e+ + ++ P+++ + ++ ++gkr+nr + +gyW+ ++++v+s + XP_010094187.1 29 PPGYRFAPSDEELIMYYLIPKSQDQIFEPNCIISEITLSDYTPEEIAA---------------TSRGNNGKRRNRLAGDGYWRLA-NTTDVYSDN 107 9*************************999788**************61...............23346899*****9*****976.55899999* PP NAM 97 gelvglkktLvfykg.rapkgektdWvmheyrl 128 g ++g k L f++ + k ektdW+mhe+++ XP_010094187.1 108 GVKIGSKSLLGFHRViPNVKEEKTDWIMHEFSV 140 *************876778889*********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-27 | 22 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.052 | 28 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-14 | 29 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MEVSETDHNY DQMEGYRVEE TAVLNYYCPP GYRFAPSDEE LIMYYLIPKS QDQIFEPNCI 60 ISEITLSDYT PEEIAATSRG NNGKRRNRLA GDGYWRLANT TDVYSDNGVK IGSKSLLGFH 120 RVIPNVKEEK TDWIMHEFSV LPSLDRKKKL TTLGEEDMLK LEDGYVLCQM YKRGSTKTNK 180 VLRRSNKNTE LQILPHNYVE TAPANLEYHA HDDHDQNSML LSKTPGRIDH GALTLVETPP 240 STSVSGENRN LGGLSSDAIL GAVPPTAAAD DGDELTAFLL KALDAEDYYY AQLMENSLPT 300 TATTSSSNIT DVSPQKANDK DLVLRGLEEV NQLISDFSNH ISTPIAPNWD TATTSTTCCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-18 | 29 | 176 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-18 | 29 | 176 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-18 | 29 | 176 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-18 | 29 | 176 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-18 | 29 | 176 | 21 | 171 | NAC domain-containing protein 19 |
3swm_B | 8e-18 | 29 | 176 | 21 | 171 | NAC domain-containing protein 19 |
3swm_C | 8e-18 | 29 | 176 | 21 | 171 | NAC domain-containing protein 19 |
3swm_D | 8e-18 | 29 | 176 | 21 | 171 | NAC domain-containing protein 19 |
3swp_A | 8e-18 | 29 | 176 | 21 | 171 | NAC domain-containing protein 19 |
3swp_B | 8e-18 | 29 | 176 | 21 | 171 | NAC domain-containing protein 19 |
3swp_C | 8e-18 | 29 | 176 | 21 | 171 | NAC domain-containing protein 19 |
3swp_D | 8e-18 | 29 | 176 | 21 | 171 | NAC domain-containing protein 19 |
4dul_A | 7e-18 | 29 | 176 | 18 | 168 | NAC domain-containing protein 19 |
4dul_B | 7e-18 | 29 | 176 | 18 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010094187.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010094187.1 | 0.0 | NAC transcription factor 56 | ||||
TrEMBL | W9RHY7 | 0.0 | W9RHY7_9ROSA; NAC domain-containing protein 19 | ||||
STRING | XP_010094187.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 4e-22 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Entrez Gene | 21400237 |