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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010093764.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 271aa MW: 30266.4 Da PI: 4.8003 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133.1 | 1.9e-41 | 4 | 134 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eelvv+yL +k+e+++ e+ + i+e++iy++ PwdLp+ ++++ ++++fF++r++++a+g r++r t+ gyWkatg+ v XP_010093764.1 4 PGFRFYPTEEELVVFYLPNKIERTREEVMDKvIPELNIYDYSPWDLPQysgvLCRGDPEQCFFFIPRQESEARGGRPSRLTEGGYWKATGSPSFV 98 9**********************997765544***************64665444566799********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++++++glk+t+vfy+grap+g+kt+W ++ey++ XP_010093764.1 99 FSSNNQTIGLKRTMVFYTGRAPNGVKTQWKINEYKA 134 **********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 45.199 | 2 | 171 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-44 | 4 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-20 | 4 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEIPGFRFYP TEEELVVFYL PNKIERTREE VMDKVIPELN IYDYSPWDLP QYSGVLCRGD 60 PEQCFFFIPR QESEARGGRP SRLTEGGYWK ATGSPSFVFS SNNQTIGLKR TMVFYTGRAP 120 NGVKTQWKIN EYKATQGDQP SSISSTGASA STSTTTPMLR QEFSLCRVYK KTKCLRAFDR 180 RPAGMEITIS NNPAINLQYD RPEEPSTLSH QAPPPAAAER GGSHDDSSSS GGGGGGGDGG 240 YQPSQTGEND YLNFPMDTDE SQALWDWDHF F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-29 | 4 | 171 | 17 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010093764.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010093764.1 | 0.0 | NAC domain-containing protein 90 isoform X1 | ||||
TrEMBL | W9QUN9 | 0.0 | W9QUN9_9ROSA; NAC domain-containing protein 90 | ||||
STRING | XP_010093764.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-69 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Entrez Gene | 21402118 |