PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093592.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 347aa    MW: 39255.9 Da    PI: 7.3431
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093592.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+ +++q+G g+W+  +++ g+ R++k+c++rw +yl
   XP_010093592.1 15 RGPWTAEEDQKLLAYIQQHGHGSWRFLPQKAGLQRCGKSCRLRWTNYL 62
                     89********************************************97 PP
2Myb_DNA-binding51.42.5e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E+  +++++++lG++ W++Ia +++ +Rt++++k++w+++l
   XP_010093592.1  68 RGKFSLQEERTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-24765IPR009057Homeodomain-like
PROSITE profilePS5129417.791062IPR017930Myb domain
SuperFamilySSF466891.83E-3012109IPR009057Homeodomain-like
SMARTSM007172.0E-131464IPR001005SANT/Myb domain
PfamPF002498.2E-161562IPR001005SANT/Myb domain
CDDcd001678.71E-111762No hitNo description
PROSITE profilePS5129425.69963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-2666117IPR009057Homeodomain-like
SMARTSM007171.6E-1667115IPR001005SANT/Myb domain
PfamPF002491.2E-1568113IPR001005SANT/Myb domain
CDDcd001671.80E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRSPCCEAD QGLKRGPWTA EEDQKLLAYI QQHGHGSWRF LPQKAGLQRC GKSCRLRWTN  60
YLRPDIKRGK FSLQEERTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLAMM  120
GIDPMTHKPK RTTLSSAAAD PKNVSNLSHM AQWESTRLEA EARFTRESKL SRQVRANDQP  180
AEDQPLSSDQ ILRKMPTTFA PPRCTDILRA WQLGRPHFPR PAQGNDHSRN TGSISTGGHF  240
FSLGLGNIGS DDKSDGSAAF LENNEADKGE SLFEFSAVFE DCGNGHDDTQ LDEVYATRRL  300
EAVGGAEWIE DENLIESSFD HLYEVNKSYW SDVLYLVNCG PSNLPVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27131175108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093592.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093592.10.0transcription factor MYB16
TrEMBLW9R1W70.0W9R1W7_9ROSA; Transcription factor
STRINGXP_010093592.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.21e-98myb domain protein 16