PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010093506.1 | ||||||||
Common Name | DREB5A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19751.9 Da PI: 8.0627 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.7e-17 | 22 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g XP_010093506.1 22 QYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 71 7******99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.54E-26 | 21 | 81 | No hit | No description |
SuperFamily | SSF54171 | 5.82E-21 | 22 | 80 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.7E-11 | 22 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-38 | 22 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.155 | 22 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 22 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 61 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MEEEGAARET AARQRGGESE KQYKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSTPVAAAR 60 AYDTAVFYLR GPSARLNFPE LLVGENGGGG CGCGDMSAAS IRKKATEVGA RVDALETALR 120 HHHQHHRHHH HHHHHRLDGG GDAEMKPCGG FVNRVDLNKL PDPENSDGEC DWDRNSD |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-15 | 21 | 79 | 4 | 63 | ATERF1 |
3gcc_A | 7e-15 | 21 | 79 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010093506.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF678379 | 0.0 | KF678379.1 Morus notabilis dehydration responsive element binding transcription factor (DREB5A) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010093506.1 | 1e-130 | ethylene-responsive transcription factor RAP2-10 | ||||
Swissprot | O22174 | 3e-58 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | W6FIY6 | 1e-128 | W6FIY6_9ROSA; Dehydration responsive element binding transcription factor | ||||
STRING | XP_010093506.1 | 1e-129 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67190.1 | 3e-55 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21390626 |
Publications ? help Back to Top | |||
---|---|---|---|
|