PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093397.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 351aa    MW: 39007.7 Da    PI: 6.5082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093397.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14157203354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  XP_010093397.1 157 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 203
                     79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-12157203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14158210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-15158212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-5167206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MMCGKKEDQA ECSQAINQNI QSFQEQFLLH QQMNHQQQQG LIFPSEVSPI LQPWSLPPVH  60
AFNPTHFGPN PVRDHDPFLV PPPPSPYASL FNRRSATPLQ FAYDHHHHGP SSDHLRILSD  120
AIGPAGQPGS GPFGLQAELG KMTAQEIMDA KALAASKSHS EAERRRRERI NNHLAKLRSL  180
LPSTTKTDKA SLLAEVIQHV KELKRQTSLI AETSPVPTEM DELTVDDASD EEGRFVIKAS  240
LCCEDRSDLI PDLIKTLKAL RLRTLKAEIT TLGGRVKNVL FITGDEDSSS GDEDQQGDHD  300
HDHHNQQAQY CISSIQEALK AVIEKKGGDH QDSSNGSVKR QRTTNNINIY P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093397.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093397.10.0transcription factor bHLH30
RefseqXP_024019422.10.0transcription factor bHLH30
RefseqXP_024019423.10.0transcription factor bHLH30
SwissprotQ9S7Y11e-108BH030_ARATH; Transcription factor bHLH30
TrEMBLW9R4020.0W9R402_9ROSA; Uncharacterized protein
STRINGXP_010093397.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]