PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093157.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 379aa    MW: 40685.9 Da    PI: 7.7696
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093157.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.2e-10527326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    +elCr+f+r G C++G rCkF H+
  XP_010093157.1  5 QELCRNFQR-GSCQFGQRCKFLHV 27
                    69*******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.6E-4228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.967229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.51E-5329IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-8527IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-8526IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MPVQQELCRN FQRGSCQFGQ RCKFLHVNPQ QQRPNNLFGA GAQSVSFQPQ KSNPYGFGVQ  60
NNSQQKPFNK PFENTWTRFS PVSTGTAPAS RQSESQAQAN HNAPCDIVGD ISYEELRAAA  120
YDDAKRGLSF QSIVDREWNL LSSKLREFEN LCKPHAVRPS LTPANQNTFP GMGPNAFSQP  180
AQNSAPTSVS TFSQLGASLN VASGPRHLFF LRPPAPSNNA FLAPSPFGVS SQTPSAFGTK  240
SLSSEIQGTY SKVFSGGVFP FEFSSCHIPV SSGDQFPAPT AASPFTSSPS VFGNNSFVRA  300
ESNPVIPSAV PAQNPGATNN PSPGLFMGLN PNSNANGEVQ QTNYTQNAEL SGVDTSVWLR  360
TKWSPGEIPD EAPPDAVCS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093157.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019219.10.0zinc finger CCCH domain-containing protein 16
TrEMBLW9RF240.0W9RF24_9ROSA; Zinc finger CCCH domain-containing protein 16
STRINGXP_010093157.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-42C3H family protein