PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LBD
Protein Properties Length: 208aa    MW: 22764 Da    PI: 8.786
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092590.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.75.1e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ Cvl+ ++     p++q +++ +++k+FG+s +l++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+
  XP_010092590.1   2 SCNGCRVLRKGCSETCVLRSCLqwidsPEAQGHATLFLAKFFGRSDLLSFVSSVPEHQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHVCQT 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_010092590.1  97 AVETVLT 103
                     *999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.5231107IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCVLR SCLQWIDSPE AQGHATLFLA KFFGRSDLLS FVSSVPEHQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQTAVET VLTGGVLRPM QGVLAPPPTT  120
MAMFDESSAA GRCTAPNRQY YPSSFFLKQD QANFRASVSV PNRRGGNTSA IERLRREHTI  180
SLSSEESVMT TSFGIGDRKE RKLLNLFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092590.11e-153LOB domain-containing protein 39
SwissprotQ9SZE84e-68LBD39_ARATH; LOB domain-containing protein 39
TrEMBLW9SE371e-152W9SE37_9ROSA; Uncharacterized protein
STRINGXP_010092590.11e-153(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-70LOB domain-containing protein 39