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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010092473.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 39765 Da PI: 4.5715 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.8 | 7.1e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v XP_010092473.1 6 LPPGFRFHPTDEELVAYYLDRKITGQTIEL-EIIPEVDLYKCEPWDLPdKsYLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRPVQ 99 79****************************.99**************95335666888************************************9 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kktLv+y+grap+g +t+Wvmheyrl XP_010092473.1 100 P-QRRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-64 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.683 | 6 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MAPMSLPPGF RFHPTDEELV AYYLDRKITG QTIELEIIPE VDLYKCEPWD LPDKSYLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRPVQP QRRPVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLIEDSLSG AASSTLKDSY ALCRVFKKTI QIPKSNKDEK SNNSAKTEKE 180 SAATANESSG GFDQISRGTE NEDDQNFNND YFPNKTLFPS ETSSSDLTQG TPTETGVADD 240 LQAPFASDNE ANSTADLYSY GVDCSSNLIE EIQMSNYESL HYQLAYPPLE LEDFPQINLG 300 EMKLLKSETT EECMSYDKFR DYMNGTVEDI FSLCSSSHEN SIPLPMQEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-59 | 1 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-59 | 1 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-59 | 1 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-59 | 1 | 158 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-59 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 7e-59 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 7e-59 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 7e-59 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 7e-59 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 7e-59 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 7e-59 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 7e-59 | 1 | 158 | 15 | 168 | NAC domain-containing protein 19 |
3ulx_A | 7e-59 | 2 | 158 | 11 | 168 | Stress-induced transcription factor NAC1 |
4dul_A | 7e-59 | 1 | 158 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-59 | 1 | 158 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00205 | DAP | Transfer from AT1G54330 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010092473.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092473.1 | 0.0 | NAC domain-containing protein 86 | ||||
TrEMBL | W9RD25 | 0.0 | W9RD25_9ROSA; NAC domain-containing protein 78 | ||||
STRING | XP_010092473.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10508 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-109 | NAC domain containing protein 20 |
Link Out ? help Back to Top | |
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Entrez Gene | 21402179 |