PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092296.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 581aa    MW: 65109.6 Da    PI: 6.1191
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092296.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS437.11.3e-1332115801373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a++++++e+ ++l+++ +  +s +g+p+qRl ay++e++ ar   s++++y+al+++e +   s++ l+++++++e++P+lkf++
  XP_010092296.1 211 LKQLLIACARALTENNNEMFEKLIEKARGVVSISGEPIQRLGAYMVEGMVARKEASGTNIYRALKCREPE---SKDLLSYMQILYEICPYLKFGY 302
                     689******************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p ++  + + le++g+rLa + +++++p+ef++ v    +d
  XP_010092296.1 303 MAANGAIAEACRNEDRIHIIDFQIAQGTQWLTLLQALAARPNGPPHVRITGIDDPVNQyaRGDGLEAVGRRLAAVSRNFNIPVEFHA-VPVFASD 396
                     *******************************************************999999**************************.68899** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ e+L ++pgEalaVn+ lqlh+++desv+le++rd +L++vkslsP+vv++veqe+++n+++F +rf+e+l+yy a+f+s++++l r+s++ri
  XP_010092296.1 397 VTREMLGIRPGEALAVNFPLQLHHTPDESVDLENPRDGLLRMVKSLSPRVVTLVEQESNTNTTPFYHRFVETLDYYLAMFESIDVTLLRNSKQRI 491
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ +++llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  XP_010092296.1 492 NVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCYS-EHYTLAEKDGAMLLGWKDRNLISASAW 580
                     **********************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.836185562IPR005202Transcription factor GRAS
PfamPF035144.4E-131211580IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MDSHQLFGIG VSSAALSSYT SSSLPNKLLG SLKFEFGNSP SSPFSSQFDS DSLTTLSDSQ  60
EQYSSTENLS GISPPCSSPL ETGSYFPRLS PSADGFCDIQ LYSGRNSPSQ QDVSCARNFK  120
NALLELETAL MSPDEEEVTR SKTLFGDQQG SVQRSMSWRE DSRQGPSLIQ RQTSLVIRPW  180
QSIEVSQTEK RHKAIEDEVF LKQNDIPPGN LKQLLIACAR ALTENNNEMF EKLIEKARGV  240
VSISGEPIQR LGAYMVEGMV ARKEASGTNI YRALKCREPE SKDLLSYMQI LYEICPYLKF  300
GYMAANGAIA EACRNEDRIH IIDFQIAQGT QWLTLLQALA ARPNGPPHVR ITGIDDPVNQ  360
YARGDGLEAV GRRLAAVSRN FNIPVEFHAV PVFASDVTRE MLGIRPGEAL AVNFPLQLHH  420
TPDESVDLEN PRDGLLRMVK SLSPRVVTLV EQESNTNTTP FYHRFVETLD YYLAMFESID  480
VTLLRNSKQR INVEQHCLAR DIVNVIACEG KERVERHELF GKWKSRLTMA GFRQYPLSSY  540
VNSVIRSLLR CYSEHYTLAE KDGAMLLGWK DRNLISASAW H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6221858026378Protein SCARECROW
5b3h_A2e-6221858025377Protein SCARECROW
5b3h_D2e-6221858025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092296.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092296.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLW9RCL60.0W9RCL6_9ROSA; Uncharacterized protein
STRINGXP_010092296.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-167GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]