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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010092247.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 442aa MW: 49483 Da PI: 5.453 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k++++ L H r+H XP_010092247.1 66 FVCPVCNKRYKSGKALGGHKRMH 88 89*******************99 PP | |||||||
2 | zf-C2H2 | 18.7 | 4.8e-06 | 126 | 146 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 Cp C ksF++ +L H+r+H XP_010092247.1 126 CPLCEKSFPSMKSLFGHMRSH 146 ********************9 PP | |||||||
3 | zf-C2H2 | 12.3 | 0.0005 | 360 | 382 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H ++H XP_010092247.1 360 YVCSVCKRSFPSYQALGGHRSSH 382 9**************99999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.87E-9 | 65 | 88 | No hit | No description |
Pfam | PF13912 | 2.7E-9 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.369 | 66 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.87E-9 | 119 | 146 | No hit | No description |
PROSITE profile | PS50157 | 8.933 | 124 | 146 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.006 | 124 | 146 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.0E-8 | 125 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 126 | 146 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.89E-5 | 358 | 386 | No hit | No description |
PROSITE profile | PS50157 | 9.91 | 360 | 387 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.6E-12 | 360 | 384 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.026 | 360 | 382 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 362 | 382 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MEEEKEDANN QGRLCLKLKI TPKPEPTTAD QDMINGHDQK MMINKLKPDD HEQVEDHVQD 60 EELLPFVCPV CNKRYKSGKA LGGHKRMHNL PPKNNNNSTK PSNKRKAIIH DNDEEDDEEE 120 EDVPICPLCE KSFPSMKSLF GHMRSHPDRG WRGIQPPPQP SSSTVPDQDH PMIDDDDDSS 180 EATPKKRRPV LLSTSNSPKT PSPASDDLKW PITAKRGSGN RITTSGSSSS SSGGLSLADV 240 PWMEKTAKEA VFDLMMLACQ KPGARSELLT ILDRINKNKG KAKKEEEKEE EEEENSGDEK 300 DYYMMKRIKN KSMKSKKIIK KMKLADLEEE EGEEGQVIRT TSTSNSAKSP ASSSGRGRQY 360 VCSVCKRSFP SYQALGGHRS SHNKKNIKII INSRLSNSDD SSRSEEATDD KDNVEDDQVS 420 AENDDSKIVK DFDLNEVPTS ED |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010092247.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092247.1 | 0.0 | zinc finger protein ZAT4 | ||||
TrEMBL | W9QY41 | 0.0 | W9QY41_9ROSA; Zinc finger protein ZAT2 | ||||
STRING | XP_010092247.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 4e-15 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21388751 |