PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092241.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family WRKY
Protein Properties Length: 743aa    MW: 79582.8 Da    PI: 6.0674
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092241.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.6e-32321378260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+ +C+vkkkvers+ +++++ei+Y+g+Hnh+k
  XP_010092241.1 321 EDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCQVKKKVERSH-EGHITEIIYKGSHNHPK 378
                     7****************************************.***************85 PP
2WRKY102.82e-32532590159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  XP_010092241.1 532 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 590
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.284315379IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-27319379IPR003657WRKY domain
SuperFamilySSF1182906.15E-25319379IPR003657WRKY domain
SMARTSM007741.9E-35320378IPR003657WRKY domain
PfamPF031061.8E-24321377IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-37517592IPR003657WRKY domain
SuperFamilySSF1182902.09E-28524592IPR003657WRKY domain
PROSITE profilePS5081138.32527592IPR003657WRKY domain
SMARTSM007741.9E-37532591IPR003657WRKY domain
PfamPF031067.7E-25533590IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MAGLDENVAI IGDWVPPSPS PRALFSAVLG GDDISSSKPL SNKSEDLFLG GPPKPFDGKE  60
LAQQIPPSGK NQLAEMVGAF SEHKSNSRGG GGLGERIAAR AGFNAPRLNT ESIRSPDLSA  120
PADTRSSILA LSPGLSPTTL LDSPVFLSNL LAQPSPTTGK FSFVSNGNST TSTLMLEAHD  180
KPNDDFFEDA NALSFAFKPV TNSNSAFFLG AATKMTSTTL RQQSFPSVEV SVQSDSSAQI  240
LEPTGIENEN KNKLHLQADF CLSCVEKDNG TNTISADQRA FDDVGGSVEH SPPHDEQLDE  300
EGNSKGSGDG TAEGGGGTVS EDGYNWRKYG QKQVKGSEYP RSYYKCTHLN CQVKKKVERS  360
HEGHITEIIY KGSHNHPKPT NRRSSVGSSH PLIDIQIDIP EQVGLQSSGD GDPVWASAQK  420
GSVDWRHDNL EVTSSASVGP EFCNQSTSLQ AQNGAQLESG DAVDASSTFS NDEDEDDRGT  480
HGSVSLGHDG EEDESESKRR KIEAHVTEMS GATRAIREPR VVVQTTSEVD ILDDGYRWRK  540
YGQKVVKGNP NPRSYYKCTN AGCTVRKHVE RASHDLKSVI TTYEGKHNHD VPAARNSSHI  600
NSGPSNNATG QASAAGINVH RPEPLQGHNG MARFERPAAG ALGSFGLSAA SRQHLVPPHG  660
FSFGMNQPGL ANLAMAGIGP VQAKFPVLPI HPYMAQQRQG NEIGFMLPKG EPKAEPISDP  720
NINLSNSSMY QQIMSRLPLG PQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36321593878Probable WRKY transcription factor 4
2lex_A1e-36321593878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092241.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092241.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLW9RCC60.0W9RCC6_9ROSA; Putative WRKY transcription factor 2
STRINGXP_010092241.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]