PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 603aa MW: 67292.5 Da PI: 9.8296

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010091635.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.8	1.3e-15	48	97	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq XP_010091635.1 48 RSKHSVTEQRRRSKINERFQILRDLVPHS----DQKRDTASFLLEVIEYVQYLQ 97 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.68E-18	44	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-22	44	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.139	46	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-13	48	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.61E-14	48	101	No hit	No description
SMART	SM00353	4.0E-12	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MRNPAKGSHE EEDYEEDDFG SRKEGPSSNT NNSNSKDAKN NDKANAIRSK HSVTEQRRRS 60 KINERFQILR DLVPHSDQKR DTASFLLEVI EYVQYLQEKV QKYDGSYPGW NSEPMKLIPW 120 RNSHWRVQSF AGHPQAIKNG PGSAFPGKFD ENNISIAPTM ITSTQSPVES DPSRDVPSKA 180 LECQPEMANK GIPVPMPQSA SLSGPTRSDA VLAHPLQVSV SDSQSTQCAT TSDAQNQQEE 240 LMIEGGTISI TSSYSQGLLN TVAQALQNAG LDLSQAGISV QIDLGKRANR ALSSGTSISK 300 DYENPPSSNQ TMIHQRDTGG REDSDQAQKR AGVRRWRLAA LQAPNPRDGS FNIVVRSLVE 360 GLSVSLEGVG FWRGDRWTTW DFVCLHQEHR ISDGAAAFGF CPLHQSRSQC WFRSWLWPWA 420 WAGFCYGWGG LMMREFLGGW VSLGVRALKV QRRSGRQRIE RVSLRQLWVA LRLDSALAAT 480 TLTQWLRRVT VKYFSPLRFC VLFSSAISGT RTRALTFWRR INLLRGPKRQ SGGGLSGVLA 540 EAQLQQTSAE QQRRGSSDSA QLEAVHSLVL RNHDQALKLL SPQISFNQTP QLLHFDPNHI 600 LGI

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MRNPAKGSHE EEDYEEDDFG SRKEGPSSNT NNSNSKDAKN NDKANAIRSK HSVTEQRRRS  60
KINERFQILR DLVPHSDQKR DTASFLLEVI EYVQYLQEKV QKYDGSYPGW NSEPMKLIPW  120
RNSHWRVQSF AGHPQAIKNG PGSAFPGKFD ENNISIAPTM ITSTQSPVES DPSRDVPSKA  180
LECQPEMANK GIPVPMPQSA SLSGPTRSDA VLAHPLQVSV SDSQSTQCAT TSDAQNQQEE  240
LMIEGGTISI TSSYSQGLLN TVAQALQNAG LDLSQAGISV QIDLGKRANR ALSSGTSISK  300
DYENPPSSNQ TMIHQRDTGG REDSDQAQKR AGVRRWRLAA LQAPNPRDGS FNIVVRSLVE  360
GLSVSLEGVG FWRGDRWTTW DFVCLHQEHR ISDGAAAFGF CPLHQSRSQC WFRSWLWPWA  420
WAGFCYGWGG LMMREFLGGW VSLGVRALKV QRRSGRQRIE RVSLRQLWVA LRLDSALAAT  480
TLTQWLRRVT VKYFSPLRFC VLFSSAISGT RTRALTFWRR INLLRGPKRQ SGGGLSGVLA  540
EAQLQQTSAE QQRRGSSDSA QLEAVHSLVL RNHDQALKLL SPQISFNQTP QLLHFDPNHI  600
LGI

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010091635.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024018285.1	0.0	transcription factor BIM2
Swissprot	Q9CAA4	1e-117	BIM2_ARATH; Transcription factor BIM2
TrEMBL	W9QP19	0.0	W9QP19_9ROSA; Uncharacterized protein
STRING	XP_010091635.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-109	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Entrez Gene	21409140

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]