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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010091472.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 24346.3 Da PI: 9.3848 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.4 | 5.6e-21 | 26 | 76 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdps+ + r++lg+f+taeeAa+a++aa+++++g+ XP_010091472.1 26 HYRGVRKRP-WGRYAAEIRDPSK---KSRVWLGTFDTAEEAARAYDAAAREFRGA 76 6********.**********965...6*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.381 | 26 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-33 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-39 | 26 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.36E-19 | 26 | 85 | No hit | No description |
SuperFamily | SSF54171 | 5.62E-23 | 26 | 84 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-14 | 26 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAIKDRIGVK KNHINKGNVS DGKEVHYRGV RKRPWGRYAA EIRDPSKKSR VWLGTFDTAE 60 EAARAYDAAA REFRGAKAKT NFPILPCAGT TATEPPSEAR SPSQSSTVES SGNGFPAREP 120 ARHLGGGLFP FLHQQTDSLP LPPHHLVAAY GGLVPTRPVL FFDALSRPEF MTPVYPVRFD 180 PVAVEFGSGG KAGSGGAQSE SDSSSVVEGQ PGKVVLDLDL NLAPPGEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-22 | 26 | 89 | 5 | 69 | ATERF1 |
3gcc_A | 7e-22 | 26 | 89 | 5 | 69 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010091472.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010091472.2 | 1e-167 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | W9QW03 | 1e-165 | W9QW03_9ROSA; Ethylene-responsive transcription factor 4 | ||||
STRING | XP_010091472.1 | 1e-166 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-29 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Entrez Gene | 21393609 |