PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010091348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 430aa MW: 46828.5 Da PI: 9.815 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.7e-05 | 203 | 225 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F ++nL+ H+ + H XP_010091348.1 203 SCPECGEIFMKPENLELHQVVkH 225 8*****************98777 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 202 | 225 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.016 | 202 | 230 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 5.28E-22 | 227 | 429 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.2E-14 | 228 | 428 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 430 aa Download sequence Send to blast |
MPSTMAKPRN QNKPTKKINQ SHKLEPQKAE KPPSWAVVRG LLTCKHSSQT QQQQNEDQNQ 60 KQKHKVQQKQ EQVLDETAKI KVKKMKCSGS LCSNTKVMHR PETGSPEVHK KRAISASSSS 120 SSSSTTNNET GSNRSIKAPL NELNGVVSTS TSSSSSFSVS SSTSGSFRGM PFRRFSGCYE 180 CRMVVDPVLG IARDPSLRGS ICSCPECGEI FMKPENLELH QVVKHAVSEL GPEDTSKNIV 240 EIIFQSSWLK KQAPVCKIDR ILKVHNTQKT ITKFEEYRDA IKAKATKLPK KNPRCVADGN 300 ELLRFHCATL RCSLGLKGSS NLCNSGPTCN ICSIIKNGFR VAGEPTGGGI LTTATSGKAH 360 DGVGGAGEDE ARAMLVCRVI AGRVKKSMEG ALEEYDSVAG AVGVYSNLDE LYVFNARAIL 420 PCFVVIYRGF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010091348.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010091348.1 | 0.0 | uncharacterized protein LOC21403058 | ||||
TrEMBL | W9QN34 | 0.0 | W9QN34_9ROSA; Uncharacterized protein | ||||
STRING | XP_010091348.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8473 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-100 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21403058 |