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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010090830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 210aa MW: 24141.2 Da PI: 4.593 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.6 | 5.1e-32 | 11 | 126 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeelv ++L +kv +++ ++i+++di+ ++Pw+L+ ++ ++ + yfFsk ++ r+t++g+Wk+ d++++++ XP_010090830.1 11 LPPGFRFCPTDEELVLHFLYHKVFLLPCHP-NIIPDIDICLHDPWELNGMALSSGNVHYFFSKV--------KQDRVTANGFWKELDIDEPIFTS 96 79*************************999.89**************95555566777888876........45799****************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vg+kk Lvfy + ++ +t+Wvm+e++l XP_010090830.1 97 SGNKVGVKKYLVFYINGES---ETNWVMEEFNL 126 **************55444...5********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-39 | 8 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.72 | 11 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-21 | 12 | 126 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGDDIGSHEN LPPGFRFCPT DEELVLHFLY HKVFLLPCHP NIIPDIDICL HDPWELNGMA 60 LSSGNVHYFF SKVKQDRVTA NGFWKELDID EPIFTSSGNK VGVKKYLVFY INGESETNWV 120 MEEFNLCHNS FTTTTAAAAA APAAYNKRQR KQKLMDCIWV LCRVHERKDI TDNSRQTFCH 180 DDDDGTELSC LDEVFFSLLD DDLEEISLQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-26 | 10 | 169 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-26 | 10 | 169 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-26 | 10 | 169 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-26 | 10 | 169 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-26 | 10 | 169 | 16 | 167 | NAC domain-containing protein 19 |
4dul_B | 8e-26 | 10 | 169 | 16 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010090830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010090830.1 | 1e-158 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 1e-60 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | W9QLZ0 | 1e-156 | W9QLZ0_9ROSA; NAC domain-containing protein 29 | ||||
STRING | XP_010090830.1 | 1e-157 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-53 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 21403576 |
Publications ? help Back to Top | |||
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