PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010090516.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | YABBY | ||||||||
Protein Properties | Length: 190aa MW: 21100.8 Da PI: 8.5063 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 221.5 | 2.5e-68 | 6 | 159 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +se+vCyv+CnfCntilavsvP +slf++vtvrCGhC +llsvn++ as ++ ++ +++ ++e+ +k++ ++++++++ + XP_010090516.1 6 MASERVCYVHCNFCNTILAVSVPCSSLFTIVTVRCGHCGNLLSVNMEAASLQTVPPQD--------PQKQISSSENPVKEYGSSSKCNKHAN--- 89 689******************************************9988755444433........34445555556665555554443333... PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 l e+ d+e p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_010090516.1 90 -LLESVDHEQPARSSPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 159 .3334444444444459****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.9E-73 | 7 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.1E-8 | 101 | 152 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.2E-5 | 106 | 153 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSLDMMASER VCYVHCNFCN TILAVSVPCS SLFTIVTVRC GHCGNLLSVN MEAASLQTVP 60 PQDPQKQISS SENPVKEYGS SSKCNKHANL LESVDHEQPA RSSPIRPPEK RQRVPSAYNR 120 FIKEEIQRIK ASNPDISHRE AFSTAAKNWA HFPHIHFGLK LDGTKNKQAK LDQTIPGDHQ 180 GTHQAANGFH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010090516.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010090516.1 | 1e-142 | axial regulator YABBY 5 isoform X4 | ||||
Swissprot | Q9XFB0 | 3e-76 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | W9QKW0 | 1e-141 | W9QKW0_9ROSA; Uncharacterized protein | ||||
STRING | XP_010090516.1 | 1e-141 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-78 | YABBY family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21400158 |
Publications ? help Back to Top | |||
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