PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010090380.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 328aa MW: 36871.3 Da PI: 4.9489

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010090380.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.9	3.6e-08	206	252	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + n +r+RR ri ++++ L+ellP+++ + ls iL +++++ksLq XP_010090380.1 206 KTNTTDRQRRMRISDRLSSLQELLPSSV--EGCQLS---ILDDVIDHVKSLQ 252 56999*******************73..666565...*********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.681	202	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-8	204	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-8	206	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-5	207	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.27E-7	208	256	No hit	No description
SMART	SM00353	3.8E-5	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MEGQSSSHNN PMQVMPFNVG NDVSHVGEDV QSQRILMASG RNWGHNDISV NVPWWINQPQ 60 EASHNYVKFL AESSAFLQMN NNNNPSEDMM MLESLSLPVS GTYAVSGVSD FQIDMSYNHL 120 GQACDSTRST EIDAWQSRLL MPHNENTDIK FTSAQHQIHA QDHAYWTQIS NGDSYNNVSR 180 ADIPRTARVA SPKSLSQPHS CASKPKTNTT DRQRRMRISD RLSSLQELLP SSVEGCQLSI 240 LDDVIDHVKS LQLQIKDICR SRLEGESETE AIIFREGFGH YLGEQQMSNE PLEEMIGKLL 300 ELNPLDAIQL LEMKGLLLMP IEFTKGLV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010090380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010090380.1	0.0	transcription factor bHLH66 isoform X2
TrEMBL	W9QKQ9	0.0	W9QKQ9_9ROSA; Uncharacterized protein
STRING	XP_010090380.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12164	24	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	3e-19	LJRHL1-like 2

Link Out ? help Back to Top
Entrez Gene	21407763