PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010090366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 154aa MW: 17557.1 Da PI: 8.1921 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37 | 4.5e-12 | 7 | 45 | 12 | 50 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +f Rr ++ KKA+EL C +ev+vi f+++g l ++ XP_010090366.1 7 SFEGRRSTLKKKASELADRCKVEVCVICFGPNGDLEVWP 45 7899*******************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.194 | 7 | 41 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.59E-14 | 7 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-10 | 7 | 44 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MDKSAKSFEG RRSTLKKKAS ELADRCKVEV CVICFGPNGD LEVWPEKPTK AQSIIEKYKE 60 ASKKGNKCKR KEKLNLSDVL ESKIKSLEKQ LREEETNWDF SDNGTGGLSL WDEELDKLTE 120 NSLKSLSDCL EAKIRMIELI KGKQTMPSND FSMF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010090366.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010090366.1 | 1e-107 | agamous-like MADS-box protein AGL103 | ||||
TrEMBL | W9R6Z6 | 1e-106 | W9R6Z6_9ROSA; Uncharacterized protein | ||||
STRING | XP_010090366.1 | 1e-106 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15475 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 9e-14 | AGAMOUS-like 103 |
Link Out ? help Back to Top | |
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Entrez Gene | 21407749 |