PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NF-YA

Protein Properties

Length: 258aa MW: 28258.2 Da PI: 10.3915

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010090113.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.6	3.8e-32	95	151	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rak+e+++kl +k+rkpylheSRh hAl+R RgsgGrF XP_010090113.1 95 DGPIYVNAKQYHGILRRRQSRAKQEAQNKL-IKHRKPYLHESRHLHALNRVRGSGGRF 151 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.8E-35	93	154	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.768	94	154	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.4E-27	97	151	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.7E-23	97	119	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.7E-23	128	151	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MKPVFLLSNP DFSHNLSQVG CSHSMAGVPY PYVDPYFGGL LTSYGPQALK LNTRTVLRDT 60 AQSPLLSISQ DFLNKTPMVG IAPARVPLPL DLADDGPIYV NAKQYHGILR RRQSRAKQEA 120 QNKLIKHRKP YLHESRHLHA LNRVRGSGGR FLSKKQLQNQ LPDPSPTAAT TITANPNPFC 180 APDSVKMHQV KKDAFGHESH LSSFSGYVTT VPTRSDTTTI PDSSSRRFPG TAPHMGGAMQ 240 CNGMLLHGGT QHCASVVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-19	97	156	4	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010090113.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024017195.1	1e-166	nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q9LNP6	1e-35	NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBL	W9QJW4	0.0	W9QJW4_9ROSA; Nuclear transcription factor Y subunit A-8
STRING	XP_010090113.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6949	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	7e-38	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Entrez Gene	21409967

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Djami-Tchatchou AT,Ntushelo K Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum. Pak. J. Biol. Sci., 2017. 20(3): p. 147-153 [PMID:29023006]