PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089663.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARF
Protein Properties Length: 1144aa    MW: 127696 Da    PI: 6.6412
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089663.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.4e-23126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_010089663.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDE 216
                     99*****************************96555444..8************************************************..456 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_010089663.1 217 KSQLLLGIRRA 227
                     77789999997 PP
2Auxin_resp124.47.8e-41252334183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdldp+rW+nS+Wr+L+
  XP_010089663.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPLRWKNSQWRNLQ 334
                     79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100175.56E-20125226No hitNo description
PfamPF023624.2E-21126227IPR003340B3 DNA binding domain
SMARTSM010191.1E-23126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337126228IPR003340B3 DNA binding domain
PfamPF065071.1E-35252334IPR010525Auxin response factor
PfamPF023091.0E-810151103IPR033389AUX/IAA domain
PROSITE profilePS5174525.49210171110IPR000270PB1 domain
SuperFamilySSF542771.47E-810301095No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1144 aa     Download sequence    Send to blast
MKAPPNGFLA TSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
ADFIPNYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKHDRDALL ASDMGLKQNR  120
QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFTMQ PPAQELVARD LHDNSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRATRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPLRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFLKQPGMP DDESEIENAF KRAMPWLGDD FGMKDPASSI FPGLSLVQWM  420
NMQQNNQFSA SQSGFFPSMV SPTALHNNLG ADDPSKLLNF QSPVMSVPSA HLNKATPSNQ  480
VNQVQQPNVA WPQQQQLHQL LQNPTNQQQQ SCSQQQQLQQ LLQTTPPNQQ LQNHQQQQQQ  540
LPQQLQRPQQ QPHQEPPQLQ QNQQLQQQQP QPPQHQQQQQ QQQQQQQICQ PPLVNNGMVV  600
PNQIPSQNLQ QPVMFSQQQL LAGNTQSQQS IHSSKNSIQL TSLPMDSQFQ QQMEMQPSLL  660
QKQQQQQAVH LQQNPLQFLQ QNLSQGAQPQ PQSQQSSHQG LSEQHLRLQL LQKFQQQQQQ  720
QQQQLFSPPS SLLQSQLLQQ QEGNHQQLQS SPLSQHQQPL NSNSFSTEKL LNSHNFSTSA  780
LTHSQHVPTS QPQSQHKPLI TIRASSGLTD GDAPSCSTSP STNNCQISPL NMLNRNQQGP  840
AMFVGDAVME PPSNLVQDLQ GKSDIRIKHE LPSSKGPDHL KYKGTITDQL EASSSGTSYI  900
DASTIQQSFP LPAFCLDGDA QSNPRNNLSF AANIDGLAPD TMLSRGYDSQ KDLQNLLANC  960
GGAPRDIETE LSTAAISSQS FGVPNIPFKP GCSSDVALND AGVLGNGLWA NQTQRIRTYT  1020
KVQKRGSVGR CIDVTRYKGY DELRHDLARM FGIEGQLEDP QRTDWKLVYV DHENDILLVG  1080
DDPWQEFVSC VQSIKILSSA EVQQMSLDGD LGQVPVPNQA CSGTDSGNAW RGQYDDNSAA  1140
SFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1741535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089663.10.0auxin response factor 19 isoform X1
TrEMBLW9QR340.0W9QR34_9ROSA; Auxin response factor
STRINGXP_010089663.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19