PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089564.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family WRKY
Protein Properties Length: 495aa    MW: 53557.9 Da    PI: 8.3226
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089564.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.22e-34244301260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+ +Cpvkkkvers  d++++ei+Y+g+Hnhek
  XP_010089564.1 244 DDGYNWRKYGQKQVKGSEFPRSYYKCTHLNCPVKKKVERSP-DGQITEIIYKGQHNHEK 301
                     8****************************************.***************85 PP
2WRKY106.41.4e-33419477159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++dpk+v++tYeg+Hnh+
  XP_010089564.1 419 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNAGCNVRKHVERASTDPKAVITTYEGKHNHD 477
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-30232303IPR003657WRKY domain
PROSITE profilePS5081124.134238302IPR003657WRKY domain
SuperFamilySSF1182906.54E-27239302IPR003657WRKY domain
SMARTSM007741.8E-38243301IPR003657WRKY domain
PfamPF031061.4E-26244300IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-37404479IPR003657WRKY domain
SuperFamilySSF1182901.44E-29411479IPR003657WRKY domain
PROSITE profilePS5081138.848414479IPR003657WRKY domain
SMARTSM007741.2E-39419478IPR003657WRKY domain
PfamPF031061.9E-26420477IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAKNEDPERF SFSAGPTVPP AVAARPTITL PPRPSMDAFF SGGTGASPGP LTLVSRFFSD  60
NNPDSDYRSF TQLLAGAISS PLARPPPSFH ADNLAQSFSK GGSDKDSGFK QSRPVNLVVA  120
NPPLFMVSPG LSPSGLLNSP GFFSPPSPFG MSHQQALAQV TAQAALAQSQ NHLPLHIEYH  180
QPSLAPASTG TQLLNPSFVS NEASQKQAVS STSDHRSSAV ESSGASHSDR KYQAPSVATD  240
KPADDGYNWR KYGQKQVKGS EFPRSYYKCT HLNCPVKKKV ERSPDGQITE IIYKGQHNHE  300
KPQPNKRAKD GGDQNGNANF QVKSENWAGN LHRSNETAPS QSVSERDQES APGALVLVPG  360
SSDSEELVDG EVREDDADAD EPNAKRRNID VGTSEVSLSQ KTVTEPKIIV QTRSEVDLLD  420
DGYRWRKYGQ KVVKGNPHPR SYYKCTNAGC NVRKHVERAS TDPKAVITTY EGKHNHDVPA  480
ARNSSHNIAN NNAHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40244480878Probable WRKY transcription factor 4
2lex_A2e-40244480878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089564.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089564.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-150WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLW9QTC50.0W9QTC5_9ROSA; Putative WRKY transcription factor 3
STRINGXP_010089564.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-101WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]