PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089493.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 494aa    MW: 54227.8 Da    PI: 5.7294
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089493.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-163582148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +lv++vk+ G g+W+++ + +g+ R++k+c++rw ++l
   XP_010089493.1 35 KGPWTAAEDAILVEYVKKRGEGNWNAVQKNVGLARCGKSCRLRWANHL 82
                     79******************************************9986 PP
2Myb_DNA-binding46.49e-1588131146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++ +E+ ++++++++lG++ W++ a+ ++ gRt++++k++w++
   XP_010089493.1  88 KGAFSHQEERIIIELHAKLGNK-WARMASQLP-GRTDNEIKNYWNT 131
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.143082IPR017930Myb domain
SuperFamilySSF466892.93E-2932129IPR009057Homeodomain-like
SMARTSM007171.2E-123484IPR001005SANT/Myb domain
PfamPF002491.0E-143582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-233689IPR009057Homeodomain-like
CDDcd001677.01E-113782No hitNo description
PROSITE profilePS5129424.72983137IPR017930Myb domain
SMARTSM007179.2E-1587135IPR001005SANT/Myb domain
PfamPF002498.3E-1488131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2490136IPR009057Homeodomain-like
CDDcd001672.65E-1090131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MAKMMINHNS NGTETEERRV TAGGENKGGT RGLKKGPWTA AEDAILVEYV KKRGEGNWNA  60
VQKNVGLARC GKSCRLRWAN HLRPNLKKGA FSHQEERIII ELHAKLGNKW ARMASQLPGR  120
TDNEIKNYWN TRMKRRQRAG LPLYPQELHQ QHQQPPQQVQ EQDQIAHNAH SSSSNSFSSL  180
LSQNKANLSL YNNFSHHAIN QIKYNVTGGG SFGLPINSRV SHLSQNVAHA LPIIPSFQYN  240
PGGTFGTLSS MLTWPPYDPV GRLMVPELPS TQTPASSDAS GVGGDQGLMG RAEISSSTTA  300
HDQCYDFVSH ESRLGNSGLL DDLLVEARTL SRNDRAKQRN GVTYDEEEEE EKGKSVAGEE  360
SVDEDGDGFP SESVLKNSGE SITTGGDDEN WTENFSSCDQ SSTGIEPSED PLDVSSMDDD  420
LMSLLNNFPT SMPVPDWYPG GGGNLSDRET SAVTSGVARH DDVVLPQNAS PIRADKPDQS  480
LKYSCYWNNM PGIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30291361107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089493.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089493.10.0transcription factor MYB101
TrEMBLW9QI300.0W9QI30_9ROSA; Transcription factor GAMYB
STRINGXP_010089493.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.24e-66myb domain protein 101