PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089408.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family Trihelix
Protein Properties Length: 600aa    MW: 67996.8 Da    PI: 7.0396
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089408.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.7e-30149234187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_010089408.1 149 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 234
                     8*************************************999*****************************98..55667*******85 PP
2trihelix538.8e-17445515271
        trihelix   2 WtkqevlaLiearremeerlrrgk.lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                     W + e+  Li++r++m++r+++g  +++ lWe++++km+  g+ r+  +C+ekwe++n++y k     +  
  XP_010089408.1 445 WLEPEITRLIQLRTSMDSRFSQGGfSEEVLWEDIAAKMACLGYDRNGFMCREKWESINNEYVKKSSKLEMS 515
                     9********************9754899*********************************7766555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.26146209IPR001005SANT/Myb domain
PROSITE profilePS500906.98148207IPR017877Myb-like domain
PfamPF138371.6E-20149235No hitNo description
CDDcd122035.54E-20149214No hitNo description
SMARTSM007171.3441504IPR001005SANT/Myb domain
PROSITE profilePS500906.574442502IPR017877Myb-like domain
CDDcd122035.14E-22443508No hitNo description
PfamPF138371.5E-11443512No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MEMEDHHHHH HQYASIADLR QLMNGRSNLI PSNIPPTAPA AAEHLFSPAP PPQQPTFEMM  60
MMGRPVSAVE IMPRGFPHPH HHPHPPPPHH HHHPHDFRSD NNSAGNSTAS ITAVTATTNS  120
APSTLSGGGG GGWEAETGGC LGGDGGTGRW PRQETLTLLE IRSRLDSKFK EANQKGPLWD  180
EVSRIMSEEH GYQRSGKKCR EKFENLYKYY KKTKEGKAGR QDGKHYRFFR QLEALYGETG  240
NQVSVPDHQT QYMSNNLQFL TSTNPSSSTH HQDQLAYNNN NQSHNSLSLS NSSEFESSSS  300
DDNDSSEKRK NRRGGSRGWK AKIKEFIDAQ MRKLMEKQEA WLEKLVKTLE QKEKERSLRE  360
EEWRKQEAAR IEKEHKFWAK ERAWIEARDS ALMDALKNIT GKEIDYKGIV LSSSPDQGLN  420
QDHDQDHGST EIENNNNNIH HQSNWLEPEI TRLIQLRTSM DSRFSQGGFS EEVLWEDIAA  480
KMACLGYDRN GFMCREKWES INNEYVKKSS KLEMSSKKRK EINSRGYNNN ESSTSLYNHG  540
GYNCDQMNDG TANSSPSPSN ANVGSTTHDH SCFPAFLIGE GSENLWENYG LKINKGGQNQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089408.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089408.10.0trihelix transcription factor PTL
SwissprotQ9LZS01e-144PTL_ARATH; Trihelix transcription factor PTL
TrEMBLW9QHV70.0W9QHV7_9ROSA; Trihelix transcription factor GT-2
STRINGXP_010089408.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-131Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]