PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010089349.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 84aa MW: 10152.4 Da PI: 10.1013 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.4e-20 | 26 | 81 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k ++++++q+++Le++F++ ++p++++r+eL ++lgL+ +qVk+WFqN+R++ k XP_010089349.1 26 KKKYHRHNAYQIQRLEAVFKEFPHPDENQRRELGRELGLDPKQVKFWFQNKRTQTK 81 79999***********************************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 12 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.92E-19 | 15 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.342 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-12 | 25 | 83 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-17 | 26 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.01E-13 | 26 | 81 | No hit | No description |
PRINTS | PR00031 | 1.8E-5 | 54 | 63 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 1.8E-5 | 63 | 79 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 84 aa Download sequence Send to blast |
MEVEIFSGDE FDQQLQAANS NSRKGKKKYH RHNAYQIQRL EAVFKEFPHP DENQRRELGR 60 ELGLDPKQVK FWFQNKRTQT KVYI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010089349.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028126569.1 | 2e-30 | homeobox-leucine zipper protein ROC8-like | ||||
Swissprot | Q7Y0V7 | 1e-27 | ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6 | ||||
TrEMBL | W9SDT9 | 7e-56 | W9SDT9_9ROSA; Homeobox-leucine zipper protein ROC6 | ||||
STRING | XP_010089349.1 | 1e-56 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18826 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21750.2 | 6e-27 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21384030 |