PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089319.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ERF
Protein Properties Length: 195aa    MW: 21745.4 Da    PI: 9.1287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089319.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-2068118255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+++AeIrdp++ng  +r++lg++ t e+Aa a+++a+ k++g
  XP_010089319.1  68 HFRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETQEDAALAYDRAAFKMRG 118
                     69*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-2368127IPR016177DNA-binding domain
CDDcd000182.83E-2968128No hitNo description
SMARTSM003804.8E-4068132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3268127IPR001471AP2/ERF domain
PROSITE profilePS5103223.72368126IPR001471AP2/ERF domain
PfamPF008471.5E-1468118IPR001471AP2/ERF domain
PRINTSPR003673.0E-136980IPR001471AP2/ERF domain
PRINTSPR003673.0E-13108128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSSFFIPNSA DMALLESVRQ HLLDDDCVNP PATFFANVAP VREATRMTGI EQYQEGARER  60
HAPSGGVHFR GVRRRPWGKY AAEIRDPKKN GARVWLGTYE TQEDAALAYD RAAFKMRGSK  120
AKLNFPHLIG SSHELELARV TPKRRSPETS ASSGDGGSPK RRKSGNGFEV EAKVELDDET  180
TWLGFCPHET INGWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-3266131368ATERF1
3gcc_A5e-3266131368ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142162KRRSPETSASSGDGGSPKRRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010089319.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324552e-46GU732455.1 Malus x domestica AP2 domain class transcription factor (AP2D31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089319.11e-145ethylene-responsive transcription factor 13
SwissprotQ8L9K16e-43ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLW9QSR51e-143W9QSR5_9ROSA; Ethylene-responsive transcription factor 13
STRINGXP_010089319.11e-144(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-45ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]