![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010089257.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 433aa MW: 47556.7 Da PI: 7.511 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 125.5 | 2.1e-39 | 183 | 260 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvC +hskap+v+v gleqrfCqqCsrfh lsef+e+krsC+rrLa+hnerrrk+++ XP_010089257.1 183 RCQVEGCHVALVNAKDYHRRHKVCAMHSKAPKVVVLGLEQRFCQQCSRFHVLSEFEESKRSCKRRLAGHNERRRKSSH 260 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-33 | 178 | 245 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.847 | 181 | 258 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.63E-38 | 182 | 263 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.3E-31 | 184 | 257 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 433 aa Download sequence Send to blast |
MEINGSNSNS NSTISTSLAW DVWELNNNNN TTSSRMDWTS TSTSTTSTAD ATGNGSFYAG 60 TGDGERQEAG GMGHAPLLNT ALHAQALHHH YYRHHHHHDQ NQEQHQQLTM YGGDGGSHLH 120 PDPHLVCLKL GKRHYFEDVT AAAVPVEERC VAGFAMGKKG KGFCGGGGGG GTTAATATAM 180 VPRCQVEGCH VALVNAKDYH RRHKVCAMHS KAPKVVVLGL EQRFCQQCSR FHVLSEFEES 240 KRSCKRRLAG HNERRRKSSH DSIARNSYHH ETKVLMGGGF PYLTSPTGRA LSLLSSKTDS 300 WVPPSDLSSR SSAALRELIA ENRAAILARQ LFLERDTWHL HHRNHHQQGE DLTSEAQQGG 360 FGSNIEPHHH QMFPEPPAHG GWERINESAA HVTLDLMQAP SPAFGFVPAR GKAKAEEEEC 420 SDLWNSFQGP NLV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 184 | 257 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 240 | 247 | KRSCKRRL |
2 | 244 | 255 | KRRLAGHNERRR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010089257.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024032956.1 | 0.0 | squamosa promoter-binding-like protein 7 | ||||
TrEMBL | W9R3S1 | 0.0 | W9R3S1_9ROSA; Squamosa promoter-binding-like protein 7 | ||||
STRING | XP_010089257.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42200.1 | 8e-35 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21404628 |