PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010089192.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Dof

Protein Properties

Length: 496aa MW: 55191.4 Da PI: 6.865

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010089192.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.8	9.9e-38	116	175	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+r Wt+GG++r+vPvG+grrknk+ XP_010089192.1 116 PDKILPCPRCKSSDTKFCYFNNYNVNQPRHFCKNCQRLWTAGGTMRDVPVGAGRRKNKHL 175 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	103	173	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-31	118	174	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.857	120	174	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	122	158	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MSENNDKYNI SENGNNMDQG IKLFGRTIPL YGVQISSAKS EAYHFPVLAV AEPLEDEREQ 60 PSPLKDSCSD VTKAELDSLN AENSSEQERS HGFRDNKDEH TETNNNSEQE KVFKKPDKIL 120 PCPRCKSSDT KFCYFNNYNV NQPRHFCKNC QRLWTAGGTM RDVPVGAGRR KNKHLASHFR 180 QMLASGDRTQ ADRLETTNSG QSQLLTYDES STGKVLRFGP DQAPLFEHKE TMLTLGNAKG 240 FIEMNSVNYP EKEQDPPPAP SALTQSGYER SELHENPMQG YVDEPASRPL ECQSIPSLVL 300 SRNPGWNNAS SAVKSHYSRH FGASNSSALN QVQWFPTHVL AVPSSFPSTI PLQFVPASYW 360 SCIPVWTSPT GNMSLSAGSF SSMSPSSSAI NNRYMGNMSP TFGKHSRDSE SIDSEPPEMR 420 VSAPKILKID DPNEPLRNPI QTRFGIKLDE DDLVVKGSVH KKLIHKIEGK DHVHSSPVMT 480 ANPAAISRSH TFRESA

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MSENNDKYNI SENGNNMDQG IKLFGRTIPL YGVQISSAKS EAYHFPVLAV AEPLEDEREQ  60
PSPLKDSCSD VTKAELDSLN AENSSEQERS HGFRDNKDEH TETNNNSEQE KVFKKPDKIL  120
PCPRCKSSDT KFCYFNNYNV NQPRHFCKNC QRLWTAGGTM RDVPVGAGRR KNKHLASHFR  180
QMLASGDRTQ ADRLETTNSG QSQLLTYDES STGKVLRFGP DQAPLFEHKE TMLTLGNAKG  240
FIEMNSVNYP EKEQDPPPAP SALTQSGYER SELHENPMQG YVDEPASRPL ECQSIPSLVL  300
SRNPGWNNAS SAVKSHYSRH FGASNSSALN QVQWFPTHVL AVPSSFPSTI PLQFVPASYW  360
SCIPVWTSPT GNMSLSAGSF SSMSPSSSAI NNRYMGNMSP TFGKHSRDSE SIDSEPPEMR  420
VSAPKILKID DPNEPLRNPI QTRFGIKLDE DDLVVKGSVH KKLIHKIEGK DHVHSSPVMT  480
ANPAAISRSH TFRESA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010089192.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024032061.1	0.0	cyclic dof factor 3
TrEMBL	W9SLB3	0.0	W9SLB3_9ROSA; Dof zinc finger protein
STRING	XP_010089192.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	4e-39	cycling DOF factor 2

Link Out ? help Back to Top
Entrez Gene	21386532