PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010088597.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 341aa MW: 38169.2 Da PI: 6.9994 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H XP_010088597.1 59 YSCSFCRREFRSAQALGGHMNVH 81 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.01E-6 | 56 | 85 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEEARHWVWA KRKRGLISTS HDPHVPNKAS SYDDSWEEQA FAEDASGPLG GCIWPPRSYS 60 CSFCRREFRS AQALGGHMNV HRRDRARLKQ SPPDLHREIL HQNHLHNNNI PVQNSIPLIT 120 SFGQPQYPSQ VCALVYSPNP NSDHDPATAN FIAPPPPCKQ SCHDKQVLIP PFNSSSSSSS 180 SPLLQENNKK SSNIIISPSS QSWSNLARTD RYNHNNISNQ KNHIGGHKIS TITHVESAGS 240 CRAKGDYHVK TDLSVSLNLV VCHSCPTLSG TGEEEETTMS CKKRRITDSS LQTSPRLVES 300 HDDDDDVPRS TELAFELSQD CSEEDLDLEL RLGDRPYKVK Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 54 | 81 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 54 | 81 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010088597.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209099 | 4e-58 | AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010088597.1 | 0.0 | zinc finger protein 10 | ||||
TrEMBL | W9QG65 | 0.0 | W9QG65_9ROSA; Putative transcriptional regulator RABBIT EARS | ||||
STRING | XP_010088597.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-26 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Entrez Gene | 21400013 |