![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010088473.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 406aa MW: 44531.6 Da PI: 9.8874 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 129 | 174 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++Ia+ + gR++k+c++rw++ XP_010088473.1 129 RGHWRPAEDAKLKELVSQYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 174 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 181 | 224 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a+ ++G++ W+ Iar ++ gRt++ +k++w+ XP_010088473.1 181 RRSFSEEEEERLLAAHSLYGNK-WAMIARLFP-GRTDNAVKNHWHV 224 6789******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.139 | 124 | 175 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-14 | 128 | 177 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 129 | 174 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.49E-28 | 129 | 222 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 130 | 182 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.31E-13 | 132 | 173 | No hit | No description |
PROSITE profile | PS51294 | 27 | 176 | 230 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-15 | 180 | 228 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-14 | 181 | 223 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 183 | 229 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.28E-7 | 192 | 223 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 406 aa Download sequence Send to blast |
MSPALQHLKK DSDGFSGYPN VNFLLPPPPP PPPLTPNLSL SKTFGESKSI ASFQMGFQIL 60 NSSTEESNKT WGFQPLQSRG TTNRTGCAQN GNRVFGNGNK KGLSLKLVEE SEGHNNNRKS 120 GGHIKLCARG HWRPAEDAKL KELVSQYGPQ NWNLIAENLE GRSGKSCRLR WFNQLDPRIN 180 RRSFSEEEEE RLLAAHSLYG NKWAMIARLF PGRTDNAVKN HWHVIMARKH REQSNVYKRR 240 RSSSSSSSSS ASQILPNVVL DMTLQQNNAN NASSTESTIS NTIDDQSAAS TCTDLSLTPS 300 SNRIPHGFFT NFNPQESQMG FKDGGFDKLI CAYRVGPIIG MTTTSRAGLD QSGQSDSNSE 360 NSAAESVATD RTSINLTMST RSKGNAKGEN MIGTLPFIDF LGVGAT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-33 | 129 | 229 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010088473.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010088473.2 | 0.0 | myb-like protein Q | ||||
Swissprot | Q5NBM8 | 5e-79 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | W9R1G4 | 0.0 | W9R1G4_9ROSA; Transcription factor | ||||
STRING | XP_010088473.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 7e-65 | myb domain protein 105 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21396845 |