PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088257.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family CPP
Protein Properties Length: 641aa    MW: 69339.9 Da    PI: 6.9231
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088257.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR25.62.4e-083033281540
             TCR  15 kkYCeCfaagkkCseeCkCedCkNke 40 
                     k YCeCf+a+ +Cs++C+C++C+N+ 
  XP_010088257.1 303 KSYCECFKAKGHCSDSCTCKSCQNDL 328
                     99**********************86 PP
2TCR46.57.1e-15378416240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++kgCnCkkskC k+YCeCf+a+  Cs +C+C++C+N+ 
  XP_010088257.1 378 HRKGCNCKKSKCAKNYCECFQANFGCSFNCRCDGCHNSF 416
                     689**********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163427.042295417IPR005172CRC domain
SMARTSM011140.018299330IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-5303327IPR005172CRC domain
SMARTSM011144.2E-13377418IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-10380415IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MDTPPEPNHT PPPPPPPSSQ EFSGYYNYTI NHPPLPQPSA PRRFASQNNQ FVFSSPSQTS  60
DVDQGHSNAS LMSYRNNLAA IIASIVRQRR NINSGYVSPA GSGIFNADHV SRPSQQTHQY  120
HHGARRCLPF GTMPVHEGST LNIGQIPSGL SHNNSNIGAS ANFTTLNSMV PYYPATNSST  180
NQPAANPIQT VSSSPDMFTS RTLGMCQNSQ ERNLARESKI DLARNSVTSS ALAVAGETCS  240
LPNNDPSESR AIIKASSGPS TSIDRDVPLS SPMQVTHIEQ QIATGSISSP VHTNEVEELN  300
QRKSYCECFK AKGHCSDSCT CKSCQNDLAH EEIVRIRREK IESQNPLAFA PKFTNESTAT  360
PANTMEDGTV MTPSSAWHRK GCNCKKSKCA KNYCECFQAN FGCSFNCRCD GCHNSFGKKA  420
GMMNTRAEIL DVPSNGNIGL MSRIDCTNSG AGNTNQFPTR EGYHDMRNYT PYLQPSSIPL  480
PSSNMPSSLW NSARHSQPSA ACLPHWNSSP GGLNTPQILE NGASFSHYGL VQDEMVGNEI  540
KAEETSQPSN AVQASSPNQN TVQLLVRVVQ DTVVGIEIKP EETSQPSNEV QASSPNQKLL  600
LLPPGLEADG PISVASLQPG LRPDRELLSW NVLSSPSHLP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1230341423120Protein lin-54 homolog
5fd3_B3e-1230341423120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010088257.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026163.10.0uncharacterized protein LOC21388613
TrEMBLW9QMH90.0W9QMH9_9ROSA; Uncharacterized protein
STRINGXP_010088257.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.11e-31Tesmin/TSO1-like CXC domain-containing protein