PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010087745.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 281aa MW: 30616 Da PI: 6.2659

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087745.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.2e-10	151	198	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq XP_010087745.1 151 SHSLAERARREKISERMKLLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 198 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.32E-9	145	202	No hit	No description
SuperFamily	SSF47459	8.77E-18	145	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-18	147	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.682	147	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-8	151	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-10	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDHPLFSESS FSAANPSAYS LAEIWSGPRM GNMGQNPGGF GESSANRDGS MEESTVTEQS 60 GGGGGRKRRD VSSEDESSKL VSTSSANDLN NTNGKRTKLV GSKYENGGPK AEAEASSVGG 120 DKPAEKEMKP SEPPKQDYIH VRARRGQATD SHSLAERARR EKISERMKLL QDLVPGCNKV 180 IGKALVLDEI INYIQSLQHQ VEFLSMKLEA VNSRMNLNPT IEGFPSKDLD SYQLKKLSQL 240 GVQAFDATGL LFGSQAPRDF VQGSHQEWLH MQVGDSIERP T

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087745.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024022875.1	0.0	transcription factor bHLH79
Swissprot	Q9LV17	4e-78	BH079_ARATH; Transcription factor bHLH79
TrEMBL	W9QL83	0.0	W9QL83_9ROSA; Uncharacterized protein
STRING	XP_010087745.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	2e-80	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21392291

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]