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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010087663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Trihelix | ||||||||
Protein Properties | Length: 354aa MW: 39806.1 Da PI: 6.1365 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.3 | 4.7e-19 | 296 | 354 | 1 | 59 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnk 59 +W++ ev+aLi++r+ +e++++ + +k+ Wee+s+ m++ g++r++k+C+e wen+nk XP_010087663.1 296 KWPEAEVQALIALRTVLEHKFQVSGSKGSIWEEISAGMHSMGYKRTAKKCREQWENINK 354 7********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.329 | 289 | 353 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-5 | 294 | 352 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 3.69E-24 | 295 | 354 | No hit | No description |
Pfam | PF13837 | 3.6E-13 | 296 | 354 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEVFAGDRQI PNPDGFPQHI APFPEPTDLI YDHPTAVLHS PDIINHRPIS PPQKLRPIRC 60 NARYPAGEFP DSGGLVGTLG NGFLSSQTGC FDGEFEWAVK VEGGDAPPMS TVCGNVSAAA 120 DDPIGVGSGT SVEGWKPDGV KRGLENESRF FPVLSSSSDD GVECLATNFK GPVNQKRRRK 180 SRRNDLEHFL ESLVMEVMEK QEKMHKQLLE MMEKMEKERV MREEAWKQLE IERRKRDEMV 240 RAEETSRSLA LISFIQNLLG EEIKIPKPGP QLTVEENGVK TDSQPDNKRD TNNKIKWPEA 300 EVQALIALRT VLEHKFQVSG SKGSIWEEIS AGMHSMGYKR TAKKCREQWE NINK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00552 | DAP | Transfer from AT5G47660 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010087663.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010087663.1 | 0.0 | trihelix transcription factor GT-2 | ||||
TrEMBL | W9QZA6 | 0.0 | W9QZA6_9ROSA; Uncharacterized protein | ||||
STRING | XP_010087663.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11112 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47660.1 | 5e-34 | Trihelix family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21393904 |