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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010087643.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | FAR1 | ||||||||
Protein Properties | Length: 690aa MW: 79677.3 Da PI: 6.302 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.7 | 3e-21 | 68 | 159 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk + +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel XP_010087643.1 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVKKKPAGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHELL 159 59********************8888.*******************************************99867789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-19 | 68 | 159 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.0E-19 | 290 | 383 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.953 | 562 | 597 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.0E-8 | 569 | 597 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.9E-6 | 572 | 599 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MTSVPSKNIW IRRQQCPCGD WKCYVTYEGD AEETSIASQL VKNDTTPSES MVAPYVGMVF 60 KNDNDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPVK KKPAGEHHRD 120 RKSVRCGCDA KMYLSKEVVD GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGPLP FLERDVRNFV QNRKRIVQEN DALLTEKREN 240 DTMELLEACK ATKEADENFV YDFTVDDNDK VENIAWSYGD SIHANLFGDV VYFDTSYRSI 300 TYGMLFGAWL GIDSNGRVIF FGCVLLQDET SRSFSWALQT FVRFMRGRCP QTIITDLDPG 360 LRDAIRTDLP ATNHVISIWN ILSKVSSWFS QPLGSRFAEF KSEFDALCRL EGTEEFELQW 420 NQMVSVFGLG TEKHIDLLYS FRASWTPCYT RGYLLAQMAT TAYSKSVDAF LKGVFNAQTC 480 LRTFFEQVGI SAHFPNQARP EMQYMYAKTC IPIEEHARSI LTPFAFNAFQ HECHLALQYA 540 TSEMANGSYL VRHFKKIDGE RLVIWIPEDE QIHCSCKEFE SSGILCRHAL RVFIVKNYFQ 600 LPEKYYLNRW RRESSLVFYD ENGTEHSNDE WFQEYQCLTE GLFAESSITK LRSDHARTEL 660 TKELARILNE VRHMPESEGV AMDVTLSPTG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010087643.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010087643.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_024022178.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | W9QZ88 | 0.0 | W9QZ88_9ROSA; Uncharacterized protein | ||||
STRING | XP_010087643.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Entrez Gene | 21393884 |
Publications ? help Back to Top | |||
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