PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087643.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family FAR1
Protein Properties Length: 690aa    MW: 79677.3 Da    PI: 6.302
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087643.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.73e-2168159190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk + +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel 
  XP_010087643.1  68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVKKKPAGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHELL 159
                     59********************8888.*******************************************99867789*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1968159IPR004330FAR1 DNA binding domain
PfamPF105512.0E-19290383IPR018289MULE transposase domain
PROSITE profilePS509669.953562597IPR007527Zinc finger, SWIM-type
PfamPF044343.0E-8569597IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-6572599IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MTSVPSKNIW IRRQQCPCGD WKCYVTYEGD AEETSIASQL VKNDTTPSES MVAPYVGMVF  60
KNDNDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPVK KKPAGEHHRD  120
RKSVRCGCDA KMYLSKEVVD GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGPLP FLERDVRNFV QNRKRIVQEN DALLTEKREN  240
DTMELLEACK ATKEADENFV YDFTVDDNDK VENIAWSYGD SIHANLFGDV VYFDTSYRSI  300
TYGMLFGAWL GIDSNGRVIF FGCVLLQDET SRSFSWALQT FVRFMRGRCP QTIITDLDPG  360
LRDAIRTDLP ATNHVISIWN ILSKVSSWFS QPLGSRFAEF KSEFDALCRL EGTEEFELQW  420
NQMVSVFGLG TEKHIDLLYS FRASWTPCYT RGYLLAQMAT TAYSKSVDAF LKGVFNAQTC  480
LRTFFEQVGI SAHFPNQARP EMQYMYAKTC IPIEEHARSI LTPFAFNAFQ HECHLALQYA  540
TSEMANGSYL VRHFKKIDGE RLVIWIPEDE QIHCSCKEFE SSGILCRHAL RVFIVKNYFQ  600
LPEKYYLNRW RRESSLVFYD ENGTEHSNDE WFQEYQCLTE GLFAESSITK LRSDHARTEL  660
TKELARILNE VRHMPESEGV AMDVTLSPTG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087643.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087643.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_024022178.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW9QZ880.0W9QZ88_9ROSA; Uncharacterized protein
STRINGXP_010087643.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]