PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

MIKC_MADS

Protein Properties

Length: 201aa MW: 23212.6 Da PI: 8.4576

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010087177.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.8	6e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 krien++nr+vt+skR++g++KKA+E+SvLCda+v++ii s+ k XP_010087177.1 9 KRIENSTNRHVTLSKRKKGLIKKASEISVLCDAKVSIIISTSSSK 53 79************************************9877655 PP
2	K-box	49.1	2.4e-17	72	135	1	64
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkk 64 yq+ sg++l++ k+e+l++e++ kke+en++ +Rh++G++++sL+++eL Le+ Le++l++ XP_010087177.1 72 YQRLSGQKLWDVKHENLNNEIDMTKKENENMEIDLRHMKGQEIQSLNIRELIGLERTLENGLTS 135 78999********************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.5E-31	1	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.932	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-29	2	96	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-21	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-18	10	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-21	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-21	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.1E-10	84	159	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	9.649	85	166	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010093	Biological Process	specification of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGRGKIEIKR IENSTNRHVT LSKRKKGLIK KASEISVLCD AKVSIIISTS SSKAPEHYCS 60 PTTSLSFILE EYQRLSGQKL WDVKHENLNN EIDMTKKENE NMEIDLRHMK GQEIQSLNIR 120 ELIGLERTLE NGLTSADFLD HLRQKDKILG AENKRLTYEL CKMEMEGQGM DNGRYNDKMR 180 DYNPLPYAFH VQPMQPNLQG M

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the genetic control of flower development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00080	ChIP-seq	Transfer from AT5G20240	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010087177.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019081.1	1e-139	floral homeotic protein PMADS 2
Swissprot	Q07474	3e-70	MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBL	W9QXU5	1e-147	W9QXU5_9ROSA; Floral homeotic protein PMADS 2
STRING	XP_010087177.1	1e-148	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4355	32	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	4e-62	MIKC_MADS family protein

Link Out ? help Back to Top
Entrez Gene	21387340

Publications ? help Back to Top
Immink RG, et al. Analysis of the petunia MADS-box transcription factor family. Mol. Genet. Genomics, 2003. 268(5): p. 598-606 [PMID:12589434] Kush A,Brunelle A,Shevell D,Chua NH The cDNA sequence of two MADS box proteins in Petunia. Plant Physiol., 1993. 102(3): p. 1051-2 [PMID:8278527]