PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087126.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 305aa    MW: 32321.5 Da    PI: 6.0511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087126.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-08147198554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ + ka++     + a++L + v+Y+k L
  XP_010087126.1 147 HSIAERLRRERIAERIRALQELVPSvN-KANDFPfyTDRAAMLDEIVDYVKFL 198
                     99***********************66.7777777999***********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-13140208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.697142198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-13144208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-6147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-8148204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MANNPSETPA DDFLEQILGF PSFASADNNL SGGDGGGLAG APPGAMMLQL SSGDGSGHMP  60
GVGGGGVGFP GSVFPLGLSL EQGKPGFLKP EEASGSGKRF RNDVVDGRAS TVKNVYHGQP  120
IPATIAPHPP AMRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP SVNKANDFPF  180
YTDRAAMLDE IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TDIPLSSVEE EGSEGGRNQP  240
AWEKWSNDGT ERQVAKLMEE NVGAAMQFLQ SKALCIMPIS LASAIYHSQP PDTSSVVKPE  300
TNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010087126.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018636.10.0transcription factor UNE12
SwissprotO227681e-130UNE12_ARATH; Transcription factor UNE12
TrEMBLW9QXQ80.0W9QXQ8_9ROSA; Uncharacterized protein
STRINGXP_010087126.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.27e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]