PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010086824.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRF
Protein Properties Length: 378aa    MW: 42489.9 Da    PI: 7.8451
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010086824.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.94.8e-2578122145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e 
  XP_010086824.1  78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 122
                     79****************************************985 PP
2QLQ59.88e-211247136
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                    s+FTa+Q+q+L++Q+l++Ky+++++P+Pp+L+  ++
  XP_010086824.1 12 SPFTATQWQELEHQALIFKYMVSGVPIPPDLIYSVK 47
                    89*****************************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.6E-121248IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.0831348IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.0E-151345IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.32578122IPR014977WRC domain
PfamPF088793.6E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MISANASARN RSPFTATQWQ ELEHQALIFK YMVSGVPIPP DLIYSVKRSL DSSFSSRLFS  60
HHPTGWGCFE MGFGRKVDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EVSSSSTTIT TATNATTTIT NPSPVMSSVN RDLSSTTPTI SSYSQLPSSM MSESLSHHPS  180
HHNPSLYPFA YPHSSSSRPP DYGLSTQNAS NNNNSSPYFC LKSESYSTQS DKDYRYFHGT  240
KESMDELAFF PESSGNARNF PESCHSLMSS YRGYSQPQFQ GLTDNSKEPM KQSSEDQQHC  300
FILGTDFKSE RANESAVKEA DTQKPLHHFF GEWPPKNTAA DSWLDLASNS RVPNGPQEDP  360
VFSATILNIF NIPCKEHV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010086824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032436.10.0growth-regulating factor 5 isoform X2
TrEMBLW9QWS90.0W9QWS9_9ROSA; Uncharacterized protein
STRINGXP_010086824.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-54growth-regulating factor 5