PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009805010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 443aa MW: 48108.1 Da PI: 8.2232 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.2e-05 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_009805010.1 58 FVCEICNKGFQRDQNLQLHRRGH 80 89*******************88 PP | |||||||
2 | zf-C2H2 | 16.9 | 1.8e-05 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_009805010.1 134 FKCERCTKKYAVQSDWKAHMKTC 156 89*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.29E-7 | 57 | 80 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 57 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 58 | 80 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 6.9E-5 | 58 | 80 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 99 | 129 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 122 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.29E-7 | 129 | 155 | No hit | No description |
SMART | SM00355 | 63 | 134 | 154 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MADMENSSSM TVAGSSLEET ITQQNFPVKK KRNLPGNPDP EAEVIALSPK ALMATNRFVC 60 EICNKGFQRD QNLQLHRRGH NLPWKLRQRT SKEVKKRVYV CPEATCIHHD PSRALGDLTG 120 IKKHFCRKHG EKKFKCERCT KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS RRDSFVTHRA 180 FCDALAQESA RAQPMGITNT EENLKADEAV TSSSSPPPQP LTPSTGVLSP VLSIQSSEFP 240 ADNQNQAGVQ LQAAQEQMTA IEPMSLSLSS SFYLSANNGS TLFQDHTGHV QHYGSTTQPA 300 LSATALLQKA AQMGATSSNN SFLRGLGLAM SSTSTSDNIS RVKLENNVEL PGLGIPLPSN 360 GPSGQWTDLM MGPSHESMMF GNKPPTLDFL GLGNDANVTS SNGFSALLSS MDGGFGVATS 420 SYGGVATRGQ PWDDHSDRKP SML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-34 | 130 | 199 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 5e-34 | 130 | 199 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009805010.1 | 0.0 | PREDICTED: zinc finger protein JACKDAW-like isoform X3 | ||||
Swissprot | Q9SCQ6 | 1e-132 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A1U7Z2A0 | 0.0 | A0A1U7Z2A0_NICSY; zinc finger protein JACKDAW-like isoform X3 | ||||
STRING | PGSC0003DMT400013174 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-130 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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