PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009804392.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 380aa MW: 44154.6 Da PI: 8.4972 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.8e-06 | 73 | 93 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg sF + +Lk+H+++H XP_009804392.1 73 CEECGASFQKPAHLKQHMQSH 93 *******************99 PP | |||||||
2 | zf-C2H2 | 15.9 | 3.8e-05 | 99 | 123 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ +C s++rk++L+rH+ H XP_009804392.1 99 FVCHidNCQSSYRRKDHLTRHLLQH 123 89*******************9887 PP | |||||||
3 | zf-C2H2 | 14.3 | 0.00012 | 128 | 153 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp C++ Fs + n++rH + H XP_009804392.1 128 FECPvdGCKRAFSIQGNMTRHVKEmH 153 89********************9988 PP | |||||||
4 | zf-C2H2 | 16.1 | 3.2e-05 | 167 | 191 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F+ s Lk+H +H XP_009804392.1 167 YVCSepRCGKGFKFASKLKKHEDSH 191 89*99****************9888 PP | |||||||
5 | zf-C2H2 | 18.4 | 5.8e-06 | 258 | 282 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC +Fs+ksnL +H + H XP_009804392.1 258 KCEfqDCQHTFSTKSNLIQHVKAvH 282 79999***************99877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 39 | 24 | 47 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.61E-10 | 69 | 123 | No hit | No description |
PROSITE profile | PS50157 | 13.588 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0058 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.3E-9 | 73 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.286 | 99 | 128 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.069 | 99 | 123 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.4E-10 | 99 | 125 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 101 | 123 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.84E-6 | 109 | 153 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-5 | 126 | 154 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.221 | 128 | 158 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0014 | 128 | 153 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 130 | 153 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.1E-7 | 162 | 191 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.19E-5 | 165 | 191 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 167 | 196 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.59 | 167 | 191 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 169 | 191 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.8 | 199 | 224 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 201 | 224 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 13 | 227 | 248 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.0E-10 | 239 | 295 | No hit | No description |
PROSITE profile | PS50157 | 13.547 | 257 | 287 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0011 | 257 | 282 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-6 | 258 | 284 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 259 | 282 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.4E-5 | 285 | 310 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 12 | 288 | 314 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 290 | 314 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MAVKILGEMG EEKREVIFRD IRRYYCEFCG ICRSKKSLIS SHILSNHHDE MERRKDEANE 60 DVKRKEGPKM NICEECGASF QKPAHLKQHM QSHSLERPFV CHIDNCQSSY RRKDHLTRHL 120 LQHQGKLFEC PVDGCKRAFS IQGNMTRHVK EMHDQRASPE ANLPKQYVCS EPRCGKGFKF 180 ASKLKKHEDS HVKLETMEAL CLEPGCMKHF TNEKCLKEHI ESCHQHIVCE ICGTKQLKKN 240 IKRHLRTHEE ESTSERIKCE FQDCQHTFST KSNLIQHVKA VHLGDKPFSC GIAGCGMRFA 300 FKHVRDRHEK SGCHVYTPGD FVEADEQFRS RPRGGRKRKL PVFEAIMRKR ITPPCGTDPV 360 FYQGSEYLSW LLSAESDEEL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 4e-18 | 75 | 219 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 4e-18 | 75 | 219 | 19 | 155 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 330 | 338 | RPRGGRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KX098600 | 0.0 | KX098600.1 Nicotiana benthamiana transcription factor IIIA 9ZF mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804392.1 | 0.0 | PREDICTED: Krueppel-related zinc finger protein 1-like isoform X2 | ||||
Refseq | XP_016477869.1 | 0.0 | PREDICTED: transcription factor IIIA-like isoform X2 | ||||
Swissprot | Q84MZ4 | 1e-139 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A1S4AMJ8 | 0.0 | A0A1S4AMJ8_TOBAC; transcription factor IIIA-like isoform X2 | ||||
TrEMBL | A0A1U7YJY4 | 0.0 | A0A1U7YJY4_NICSY; Krueppel-related zinc finger protein 1-like isoform X2 | ||||
STRING | XP_009804391.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-134 | transcription factor IIIA |