PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804280.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 205aa    MW: 23861.4 Da    PI: 9.6869
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804280.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.31.2e-33311302103
                     HHHHHHHHHC.......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
    HSF_DNA-bind   2 Flkklyeile.......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                     Fl k+ye+le        +e ++++sw+e+g+ fvv+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkkv +++         weF+h++Fk+g
  XP_009804280.1  31 FLLKTYELLEleeeeenYSEKNKVVSWNEEGTGFVVWSPAEFSELMLPKYFKHNNFSSFIRQLNTYGFKKVASKR---------WEFSHEKFKRG 116
                     99********7766554448999*************************************************999.........*********** PP

                     XXXXXXXXXXXXXX CS
    HSF_DNA-bind  90 kkellekikrkkse 103
                     +k+ll ki rkks+
  XP_009804280.1 117 SKHLLGKITRKKSD 130
                     ***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-3524121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-4127127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-2828127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2931127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-123861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-127688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-1289101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MATAAVGTAE DRTISRKVGQ PPTRTKCPAP FLLKTYELLE LEEEEENYSE KNKVVSWNEE  60
GTGFVVWSPA EFSELMLPKY FKHNNFSSFI RQLNTYGFKK VASKRWEFSH EKFKRGSKHL  120
LGKITRKKSD PSAFPAYLKP CDQILAAKEG NNISLQLLME ENHNLRKERL ELEMQIAHFK  180
TLETKLMECL SQYVGNQHNK VRRLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A1e-17251272106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A1e-17251272106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804280.11e-152PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A1U7YZZ71e-151A0A1U7YZZ7_NICSY; heat stress transcription factor B-2a-like
STRINGXP_009804280.11e-152(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-40heat shock transcription factor B2A