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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_009803495.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 333aa MW: 37248.9 Da PI: 9.2399 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009803495.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 368 | 1.7e-112 | 1 | 333 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg....yyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88
mdd+g++e r+k+ ++ ++ +s+k q+m+++ erda+i+ernlalsek+aa+aerdma lqrd+a+aern a++erdn++++l+++e
XP_009803495.1 1 MDDSGHHEnaRHKPpqgqWFMQHqPSMK-----QIMAIMGERDAAIQERNLALSEKRAALAERDMAILQRDSAIAERNSAIMERDNAIATLQYRE 90
8999998878998743344555556666.....************************************************************** PP
GAGA_bind 89 nsla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeekle.alpieeaaeeakekkkkkkrqrakkpkekkak.kkkkkseksk 175
ns++ s +p+g+q+ +++k++++ q +++ pql++++++ ++++++e + p++ aa+e ++++++k++++ak ++k++ k+ kk +k+
XP_009803495.1 91 NSMNsgnmSPCPPGCQIAHEVKHMHHPQLhVHHqPQLGEPTFNHSDMHMSEsSIPLSPAAPELTKSRRNKRSKEAKAVTSSKRTsKPSKKVKKEG 185
**99999889******************964446*********9999987625788888888888877776665554443333325555444444 PP
GAGA_bind 176 kkvkkesader......................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
++ +k de+ +k+++k+++ +ln+vs+Dest+PvPvCsCtG lr YkWGnGGWqS+CCt ++S+yPLP+ +
XP_009803495.1 186 EDLNKTMLDESqewngaqemgggnddvnrqlgvTKTDWKDQGRGLNQVSFDESTMPVPVCSCTGDLRPSYKWGNGGWQSSCCTNNLSMYPLPMLP 280
4444444442257889******************************************************************************* PP
GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn+++ti+
XP_009803495.1 281 NKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 333
****************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MDDSGHHENA RHKPPQGQWF MQHQPSMKQI MAIMGERDAA IQERNLALSE KRAALAERDM 60
AILQRDSAIA ERNSAIMERD NAIATLQYRE NSMNSGNMSP CPPGCQIAHE VKHMHHPQLH 120
VHHQPQLGEP TFNHSDMHMS ESSIPLSPAA PELTKSRRNK RSKEAKAVTS SKRTSKPSKK 180
VKKEGEDLNK TMLDESQEWN GAQEMGGGND DVNRQLGVTK TDWKDQGRGL NQVSFDESTM 240
PVPVCSCTGD LRPSYKWGNG GWQSSCCTNN LSMYPLPMLP NKRHARIGGR KMSGSAFTKL 300
LSRLAAEGHD LSNPVDLKDN WAKHGTNRYI TIK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982302 | 0.0 | FJ982302.1 Nicotiana tabacum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds. |
