PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009803468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 210aa MW: 23325 Da PI: 6.1534 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F ++ L H++ H XP_009803468.1 58 FSCNFCRRKFYSSQALGGHQNAH 80 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.74E-6 | 56 | 85 | No hit | No description |
PROSITE profile | PS50157 | 11.198 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MKPPNFNLES EDESEDSMPV TLDLTLGFNS SDPELNANGE TSDEVVPHPP TAVLSRVFSC 60 NFCRRKFYSS QALGGHQNAH KRERTLAKRA MRMGMLSDRY ASLASLPLHG AAFRSLGVEA 120 HAYMHQRVSY QDTPTHPSRA GARFEQGYFG MPVFVEDDEV EMFWPGSFRQ VEGIGGNQRF 180 NSGQGSNINF VTVAPPTRTD PSLPDLNLKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-176 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803468.1 | 1e-157 | PREDICTED: zinc finger protein 4-like isoform X3 | ||||
Refseq | XP_016481125.1 | 1e-157 | PREDICTED: zinc finger protein 4-like isoform X3 | ||||
Swissprot | Q39263 | 3e-48 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A1S4AWY1 | 1e-155 | A0A1S4AWY1_TOBAC; zinc finger protein 4-like isoform X3 | ||||
TrEMBL | A0A1U7YK23 | 1e-155 | A0A1U7YK23_NICSY; zinc finger protein 4-like isoform X3 | ||||
STRING | XP_009803464.1 | 1e-144 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 1e-50 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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