PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009803292.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 226aa MW: 26313.4 Da PI: 5.2888

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009803292.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.1e-19	24	74	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+eq++ Le++F+++ ++ +++ eLA+ lgL+ rqV +WFqNrRa++k XP_009803292.1 24 RFTDEQVKLLESMFKQEIKLEPRKKLELARDLGLQPRQVAIWFQNRRARWK 74 7*************************************************9 PP
2	HD-ZIP_I/II	120.7	7.3e-39	23	112	4	93
HD-ZIP_I/II 4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +r+++eqvklLE++F++e kLep++K elar+Lglqprqva+WFqnrRAR+k+kq+E++y+ Lk+++d+l+ + ++L++e+e+L ++l+e XP_009803292.1 23 KRFTDEQVKLLESMFKQEIKLEPRKKLELARDLGLQPRQVAIWFQNRRARWKSKQMEHEYRLLKAEFDKLNMQFQSLKQEKESLLKQLEE 112 8************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.68E-19	11	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.589	16	76	IPR001356	Homeobox domain
SMART	SM00389	2.3E-17	18	80	IPR001356	Homeobox domain
Pfam	PF00046	8.0E-17	24	74	IPR001356	Homeobox domain
CDD	cd00086	1.68E-14	24	77	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-20	24	83	IPR009057	Homeodomain-like
PRINTS	PR00031	3.7E-6	47	56	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	51	74	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.7E-6	56	72	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.6E-12	76	117	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MEAEDTLTHG NTEPSNKKSK DGKRFTDEQV KLLESMFKQE IKLEPRKKLE LARDLGLQPR 60 QVAIWFQNRR ARWKSKQMEH EYRLLKAEFD KLNMQFQSLK QEKESLLKQL EELNDQLENN 120 HAGCSRGQDS LDSKIYTCSE NGGTDLELKD NISGCLNASV EGKKVNEVEN DREGRLIEHF 180 RWKEEPEFWN MEELGDSSLG SPGHWCAVGL GRTFDLSCGN SKWWEF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	76	RRARWKSKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803292.1	1e-166	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
Refseq	XP_016508631.1	1e-166	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A1S4D5H4	1e-164	A0A1S4D5H4_TOBAC; homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A1U7YGQ4	1e-164	A0A1U7YGQ4_NICSY; homeobox-leucine zipper protein ATHB-12-like
STRING	XP_009803292.1	1e-165	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	5e-34	homeobox 7