PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009802970.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 192aa MW: 22055.4 Da PI: 8.7927

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009802970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.4	6.8e-12	18	57	4	43
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +k+ v s+ ++ + KKA+E+S+LC++e+a++ifs XP_009802970.1 18 RDKRAEVVAISNMQKSLCKKAKEISILCGIEIAILIFSII 57 6778888999***************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.9E-4	1	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.213	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-13	9	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.5E-9	18	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-5	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-5	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MERNSSQIRK NVERDFVRDK RAEVVAISNM QKSLCKKAKE ISILCGIEIA ILIFSIIGQP 60 FLFGSPNVES VVRRFLKAKQ PIASPLSGYI SYERISGRKR KEEMDKKKKK VEENKDKEKA 120 LESIFTYCPS EDFNLTDLEK FEKLDQNIKK LSNYLIEEIA QLQFVNDAED PNLALEMNVT 180 SSSTLPSNWL SL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802970.1	1e-137	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A1U7YW47	1e-135	A0A1U7YW47_NICSY; agamous-like MADS-box protein AGL61
STRING	XP_009802970.1	1e-136	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	2e-13	AGAMOUS-like 29