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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009802925.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 305aa MW: 34334.2 Da PI: 8.133 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.1 | 2.6e-32 | 173 | 229 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQyq+Il+RR+ Rakle+++kl +k+rkpylheSRh+hAl+R+Rg+gGrF XP_009802925.1 173 DEPIFVNAKQYQAILRRREYRAKLEAQNKL-SKGRKPYLHESRHRHALNRARGPGGRF 229 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.2E-34 | 171 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.699 | 172 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.1E-27 | 174 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.3E-22 | 175 | 197 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 177 | 197 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.3E-22 | 206 | 229 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MISRMQDLLQ KDSDHSSVST APSISVRPSW RTSKESQMQQ WLTFPGPQNP EQFGFHFQDQ 60 DSSSTQSTGQ SCPEVATEGE SKIYVKSNMP FQAGYSKSIE KPDEAQSEST LSSHEHDCTY 120 QGNHKQIAYA PFAYSDPYCH GLLAAYGQCS TVYPQMLGPI SARVPLPLDY QQDEPIFVNA 180 KQYQAILRRR EYRAKLEAQN KLSKGRKPYL HESRHRHALN RARGPGGRFL NMMKLLESGS 240 PNVTYVLDSP VSNKLQLNRQ IMEPKVHHSK NFQESYSTPT CSGISNGSNC DDIGQQQPLN 300 YSAFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-19 | 173 | 231 | 2 | 60 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802925.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
Refseq | XP_009802926.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
Swissprot | Q9SYH4 | 1e-44 | NFYA5_ARATH; Nuclear transcription factor Y subunit A-5 | ||||
TrEMBL | A0A1U7YVZ9 | 0.0 | A0A1U7YVZ9_NICSY; nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
STRING | XP_009802925.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13966 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 2e-42 | nuclear factor Y, subunit A5 |