PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802745.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 137aa    MW: 15770.1 Da    PI: 8.9213
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.7e-15854450
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    + k+n+  t+  R++ i  K  ELS+LCd++ + ii s++g+l++++
  XP_009802745.1  8 KKKTNNPKTYQVRKECIKRKTMELSTLCDIKCCTIITSPQGELQTWP 54
                    57899*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.993153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-14876IPR002100Transcription factor, MADS-box
PfamPF003196.9E-10953IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MAEENQNKKK TNNPKTYQVR KECIKRKTME LSTLCDIKCC TIITSPQGEL QTWPENLDAV  60
KQVLNLYTKT LTPNKNANKE LSEKEEEIDI LTLVESKLDA VNNRILYLEN KNAGFVSNSK  120
GKVRNRGLND LLIDWKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802745.19e-95PREDICTED: agamous-like MADS-box protein AGL86
TrEMBLA0A1U7YVF42e-93A0A1U7YVF4_NICSY; agamous-like MADS-box protein AGL86
STRINGXP_009802745.13e-94(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.12e-09AGAMOUS-like 98