PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009802285.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 343aa MW: 38681.6 Da PI: 7.4057 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.9 | 2.7e-06 | 115 | 135 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C +Gd C FaHg XP_009802285.1 115 ACPDFRK-GNCLRGDGCEFAHG 135 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.9E-4 | 110 | 136 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.878 | 111 | 137 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-5 | 115 | 137 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.559 | 145 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 145 | 168 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MIGGKNHHLN PTVDIPSWPY IDDQTANMHF MLSPNENSNS TPNFAEDYCS QFELENGEIE 60 LPVDMYACDN FRMFEFKVRN CARGRSHDWT ECPYLHPGEK ARRRDPRKYH YSGTACPDFR 120 KGNCLRGDGC EFAHGVFECW LHPARYRTQP CKDGVNCKRR VCFFAHSADQ LRVLSPNTDS 180 AFEHQSPRLC GRALQFVSSP ESSSPPTESP PMSPMLSRSL GSNSVNDVMA SLRQLQLSRL 240 NSMPSAWKVQ LGSPRLGSPG RPVTRPGFCS LPVTPTGELT RPGKRCFDLW EEEPVFERVE 300 SGRELRVKMF ARLSKANPLD GVNPNLNSDA PNPDVGWVSD LIQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802285.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 20-like | ||||
Swissprot | Q9M0G2 | 1e-112 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A1U7YU07 | 0.0 | A0A1U7YU07_NICSY; zinc finger CCCH domain-containing protein 20-like | ||||
STRING | XP_009802285.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1857 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-101 | C3H family protein |
Publications ? help Back to Top | |||
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