 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009802134.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
NAC |
| Protein Properties |
Length: 343aa MW: 39121.5 Da PI: 8.3076 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009802134.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 178.4 | 2e-55 | 17 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdeel+++yL +kv ++++ + +i evd++k+ePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkd+e+++
XP_009802134.1 17 LPPGFRFHPTDEELITHYLSNKVVDSNFFA-IAIGEVDLNKFEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDREIFR- 109
79*************************877.78***************888999****************************************. PP
NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
+++lvg+kktLvfykgrapkgekt+Wv+heyrle
XP_009802134.1 110 GKSLVGMKKTLVFYKGRAPKGEKTNWVIHEYRLE 143
999*****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MENYSGLVKE DDQQMELPPG FRFHPTDEEL ITHYLSNKVV DSNFFAIAIG EVDLNKFEPW 60
DLPWKAKMGE KEWYFFCVRD KKYPTGLRTN RATAAGYWKA TGKDREIFRG KSLVGMKKTL 120
VFYKGRAPKG EKTNWVIHEY RLEGRLSLQN LPKTAKNEWV ICRVFQKSCG GKKIHISGLV 180
KLNSDENEMA NSNCLPPLTD SSPYTSKIKP SASQSSHVHC FSNFFTAQKS QENLINCFNN 240
SPNFSALSNP MNNIPINTFS CNQIVPVQSS FQSQVSFGMQ NPTILKTLLE NYTQNFKKEE 300
IVSLSQETKL STDMNNEISS IVSNLEMGRR LLEDQSLDCL WGC
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 7e-55 | 8 | 173 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 7e-55 | 8 | 173 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 7e-55 | 8 | 173 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 7e-55 | 8 | 173 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 8e-55 | 8 | 173 | 9 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 7e-55 | 8 | 173 | 6 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 7e-55 | 8 | 173 | 6 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975518 | 1e-103 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
